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GENCODE: the reference human genome annotation for The ENCODE Project.
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, Hunt T, Kay M, Mukherjee G, Rajan J, Despacio-Reyes G, Saunders G, Steward C, Harte R, Lin M, Howald C, Tanzer A, Derrien T, Chrast J, Walters N, Balasubramanian S, Pei B, Tress M, Rodriguez JM, Ezkurdia I, van Baren J, Brent M, Haussler D, Kellis M, Valencia A, Reymond A, Gerstein M, Guigó R, Hubbard TJ. Harrow J, et al. Genome Res. 2012 Sep;22(9):1760-74. doi: 10.1101/gr.135350.111. Genome Res. 2012. PMID: 22955987 Free PMC article.
Functional transcriptomics in the post-ENCODE era.
Mudge JM, Frankish A, Harrow J. Mudge JM, et al. Among authors: harrow j. Genome Res. 2013 Dec;23(12):1961-73. doi: 10.1101/gr.161315.113. Epub 2013 Oct 30. Genome Res. 2013. PMID: 24172201 Free PMC article.
GENCODE pseudogenes.
Frankish A, Harrow J. Frankish A, et al. Among authors: harrow j. Methods Mol Biol. 2014;1167:129-55. doi: 10.1007/978-1-4939-0835-6_10. Methods Mol Biol. 2014. PMID: 24823776
The state of play in higher eukaryote gene annotation.
Mudge JM, Harrow J. Mudge JM, et al. Among authors: harrow j. Nat Rev Genet. 2016 Dec;17(12):758-772. doi: 10.1038/nrg.2016.119. Epub 2016 Oct 24. Nat Rev Genet. 2016. PMID: 27773922 Free PMC article. Review.
GENCODE: producing a reference annotation for ENCODE.
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R. Harrow J, et al. Genome Biol. 2006;7 Suppl 1(Suppl 1):S4.1-9. doi: 10.1186/gb-2006-7-s1-s4. Epub 2006 Aug 7. Genome Biol. 2006. PMID: 16925838 Free PMC article.
150 results