Kim D - Search Results

1

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.

Yang L, Tan J, O'Brien EJ, Monk JM, Kim D, Li HJ, Charusanti P, Ebrahim A, Lloyd CJ, Yurkovich JT, Du B, Dräger A, Thomas A, Sun Y, Saunders MA, Palsson BO. Yang L, et al. Among authors: kim d. Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10810-5. doi: 10.1073/pnas.1501384112. Epub 2015 Aug 10. Proc Natl Acad Sci U S A. 2015. PMID: 26261351 Free PMC article.

2

The PurR regulon in Escherichia coli K-12 MG1655.

Cho BK, Federowicz SA, Embree M, Park YS, Kim D, Palsson BØ. Cho BK, et al. Among authors: kim d. Nucleic Acids Res. 2011 Aug;39(15):6456-64. doi: 10.1093/nar/gkr307. Epub 2011 May 13. Nucleic Acids Res. 2011. PMID: 21572102 Free PMC article.

3

Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling.

Kim D, Hong JS, Qiu Y, Nagarajan H, Seo JH, Cho BK, Tsai SF, Palsson BØ. Kim D, et al. PLoS Genet. 2012;8(8):e1002867. doi: 10.1371/journal.pgen.1002867. Epub 2012 Aug 9. PLoS Genet. 2012. PMID: 22912590 Free PMC article.

4

Network context and selection in the evolution to enzyme specificity.

Nam H, Lewis NE, Lerman JA, Lee DH, Chang RL, Kim D, Palsson BO. Nam H, et al. Among authors: kim d. Science. 2012 Aug 31;337(6098):1101-4. doi: 10.1126/science.1216861. Science. 2012. PMID: 22936779 Free PMC article.

5

Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features.

Seo JH, Hong JS, Kim D, Cho BK, Huang TW, Tsai SF, Palsson BO, Charusanti P. Seo JH, et al. Among authors: kim d. BMC Genomics. 2012 Nov 29;13:679. doi: 10.1186/1471-2164-13-679. BMC Genomics. 2012. PMID: 23194155 Free PMC article.

6

Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli.

Chang RL, Andrews K, Kim D, Li Z, Godzik A, Palsson BO. Chang RL, et al. Among authors: kim d. Science. 2013 Jun 7;340(6137):1220-3. doi: 10.1126/science.1234012. Science. 2013. PMID: 23744946 Free PMC article.

7

Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states.

Cho BK, Kim D, Knight EM, Zengler K, Palsson BO. Cho BK, et al. Among authors: kim d. BMC Biol. 2014 Jan 24;12:4. doi: 10.1186/1741-7007-12-4. BMC Biol. 2014. PMID: 24461193 Free PMC article.

8

Determining the control circuitry of redox metabolism at the genome-scale.

Federowicz S, Kim D, Ebrahim A, Lerman J, Nagarajan H, Cho BK, Zengler K, Palsson B. Federowicz S, et al. Among authors: kim d. PLoS Genet. 2014 Apr 3;10(4):e1004264. doi: 10.1371/journal.pgen.1004264. eCollection 2014 Apr. PLoS Genet. 2014. PMID: 24699140 Free PMC article.

9

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli.

Seo SW, Kim D, Latif H, O'Brien EJ, Szubin R, Palsson BO. Seo SW, et al. Among authors: kim d. Nat Commun. 2014 Sep 15;5:4910. doi: 10.1038/ncomms5910. Nat Commun. 2014. PMID: 25222563 Free PMC article.

10

Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli.

Seo SW, Kim D, O'Brien EJ, Szubin R, Palsson BO. Seo SW, et al. Among authors: kim d. Nat Commun. 2015 Aug 10;6:7970. doi: 10.1038/ncomms8970. Nat Commun. 2015. PMID: 26258987 Free PMC article.

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