White MA - Search Results

1

Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites.

Savic D, Roberts BS, Carleton JB, Partridge EC, White MA, Cohen BA, Cooper GM, Gertz J, Myers RM. Savic D, et al. Among authors: white ma. Genome Res. 2015 Dec;25(12):1791-800. doi: 10.1101/gr.191593.115. Epub 2015 Oct 20. Genome Res. 2015. PMID: 26486725 Free PMC article.

2

A systematic screen for transcriptional regulators of the yeast cell cycle.

White MA, Riles L, Cohen BA. White MA, et al. Genetics. 2009 Feb;181(2):435-46. doi: 10.1534/genetics.108.098145. Epub 2008 Nov 24. Genetics. 2009. PMID: 19033152 Free PMC article.

3

The cis-regulatory logic of Hedgehog gradient responses: key roles for gli binding affinity, competition, and cooperativity.

Parker DS, White MA, Ramos AI, Cohen BA, Barolo S. Parker DS, et al. Among authors: white ma. Sci Signal. 2011 Jun 7;4(176):ra38. doi: 10.1126/scisignal.2002077. Sci Signal. 2011. PMID: 21653228 Free PMC article.

4

A model of spatially restricted transcription in opposing gradients of activators and repressors.

White MA, Parker DS, Barolo S, Cohen BA. White MA, et al. Mol Syst Biol. 2012;8:614. doi: 10.1038/msb.2012.48. Mol Syst Biol. 2012. PMID: 23010997 Free PMC article.

5

Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.

White MA, Myers CA, Corbo JC, Cohen BA. White MA, et al. Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11952-7. doi: 10.1073/pnas.1307449110. Epub 2013 Jul 1. Proc Natl Acad Sci U S A. 2013. PMID: 23818646 Free PMC article.

6

Understanding how cis-regulatory function is encoded in DNA sequence using massively parallel reporter assays and designed sequences.

White MA. White MA. Genomics. 2015 Sep;106(3):165-170. doi: 10.1016/j.ygeno.2015.06.003. Epub 2015 Jun 10. Genomics. 2015. PMID: 26072432 Free PMC article. Review.

7

A Simple Grammar Defines Activating and Repressing cis-Regulatory Elements in Photoreceptors.

White MA, Kwasnieski JC, Myers CA, Shen SQ, Corbo JC, Cohen BA. White MA, et al. Cell Rep. 2016 Oct 25;17(5):1247-1254. doi: 10.1016/j.celrep.2016.09.066. Cell Rep. 2016. PMID: 27783940 Free PMC article.

8

Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution.

Peichel CL, McCann SR, Ross JA, Naftaly AFS, Urton JR, Cech JN, Grimwood J, Schmutz J, Myers RM, Kingsley DM, White MA. Peichel CL, et al. Among authors: white ma. Genome Biol. 2020 Jul 19;21(1):177. doi: 10.1186/s13059-020-02097-x. Genome Biol. 2020. PMID: 32684159 Free PMC article.

9

Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish.

Naftaly AS, Pau S, White MA. Naftaly AS, et al. Among authors: white ma. Genome Res. 2021 Aug;31(8):1486-1497. doi: 10.1101/gr.274282.120. Epub 2021 Jun 15. Genome Res. 2021. PMID: 34131005 Free PMC article.

10

Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps.

Dumont BL, White MA, Steffy B, Wiltshire T, Payseur BA. Dumont BL, et al. Among authors: white ma. Genome Res. 2011 Jan;21(1):114-25. doi: 10.1101/gr.111252.110. Epub 2010 Oct 26. Genome Res. 2011. PMID: 20978138 Free PMC article.

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