Berendsen HJ - Search Results

1

Benchmark of Schemes for Multiscale Molecular Dynamics Simulations.

Goga N, Melo MN, Rzepiela AJ, de Vries AH, Hadar A, Marrink SJ, Berendsen HJ. Goga N, et al. Among authors: berendsen hj. J Chem Theory Comput. 2015 Apr 14;11(4):1389-98. doi: 10.1021/ct501102b. J Chem Theory Comput. 2015. PMID: 26574351

2

Stochastic Dynamics with Correct Sampling for Constrained Systems.

Peters EA, Goga N, Berendsen HJ. Peters EA, et al. Among authors: berendsen hj. J Chem Theory Comput. 2014 Oct 14;10(10):4208-20. doi: 10.1021/ct500380x. J Chem Theory Comput. 2014. PMID: 26588119

3

Efficient Algorithms for Langevin and DPD Dynamics.

Goga N, Rzepiela AJ, de Vries AH, Marrink SJ, Berendsen HJ. Goga N, et al. Among authors: berendsen hj. J Chem Theory Comput. 2012 Oct 9;8(10):3637-49. doi: 10.1021/ct3000876. Epub 2012 Jun 13. J Chem Theory Comput. 2012. PMID: 26593009

4

Determining equilibrium constants for dimerization reactions from molecular dynamics simulations.

De Jong DH, Schäfer LV, De Vries AH, Marrink SJ, Berendsen HJ, Grubmüller H. De Jong DH, et al. Among authors: berendsen hj. J Comput Chem. 2011 Jul 15;32(9):1919-28. doi: 10.1002/jcc.21776. Epub 2011 Apr 5. J Comput Chem. 2011. PMID: 21469160 Free article.

5

High-Throughput Simulations Reveal Membrane-Mediated Effects of Alcohols on MscL Gating.

Melo MN, Arnarez C, Sikkema H, Kumar N, Walko M, Berendsen HJ, Kocer A, Marrink SJ, Ingólfsson HI. Melo MN, et al. Among authors: berendsen hj. J Am Chem Soc. 2017 Feb 22;139(7):2664-2671. doi: 10.1021/jacs.6b11091. Epub 2017 Feb 10. J Am Chem Soc. 2017. PMID: 28122455 Free PMC article.

6

Molecular dynamics simulation of a phospholipid membrane.

Egberts E, Marrink SJ, Berendsen HJ. Egberts E, et al. Among authors: berendsen hj. Eur Biophys J. 1994;22(6):423-36. doi: 10.1007/BF00180163. Eur Biophys J. 1994. PMID: 8149924

7

A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems.

Tieleman DP, Marrink SJ, Berendsen HJ. Tieleman DP, et al. Among authors: berendsen hj. Biochim Biophys Acta. 1997 Nov 21;1331(3):235-70. doi: 10.1016/s0304-4157(97)00008-7. Biochim Biophys Acta. 1997. PMID: 9512654 Review. No abstract available.

8

Proton transport across transient single-file water pores in a lipid membrane studied by molecular dynamics simulations.

Marrink SJ, Jähnig F, Berendsen HJ. Marrink SJ, et al. Among authors: berendsen hj. Biophys J. 1996 Aug;71(2):632-47. doi: 10.1016/S0006-3495(96)79264-0. Biophys J. 1996. PMID: 8842203 Free PMC article.

9

Molecular dynamics simulations as a tool for improving protein stability.

Pikkemaat MG, Linssen AB, Berendsen HJ, Janssen DB. Pikkemaat MG, et al. Among authors: berendsen hj. Protein Eng. 2002 Mar;15(3):185-92. doi: 10.1093/protein/15.3.185. Protein Eng. 2002. PMID: 11932489

10

The consistency of large concerted motions in proteins in molecular dynamics simulations.

de Groot BL, van Aalten DM, Amadei A, Berendsen HJ. de Groot BL, et al. Among authors: berendsen hj. Biophys J. 1996 Oct;71(4):1707-13. doi: 10.1016/S0006-3495(96)79372-4. Biophys J. 1996. PMID: 8889148 Free PMC article.

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