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WormBase 2016: expanding to enable helminth genomic research.
Howe KL, Bolt BJ, Cain S, Chan J, Chen WJ, Davis P, Done J, Down T, Gao S, Grove C, Harris TW, Kishore R, Lee R, Lomax J, Li Y, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Schindelman G, Stanley E, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW. Howe KL, et al. Among authors: davis p. Nucleic Acids Res. 2016 Jan 4;44(D1):D774-80. doi: 10.1093/nar/gkv1217. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578572 Free PMC article.
WormBase: a multi-species resource for nematode biology and genomics.
Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. Harris TW, et al. Among authors: davis p. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7. doi: 10.1093/nar/gkh066. Nucleic Acids Res. 2004. PMID: 14681445 Free PMC article.
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. Chen N, et al. Among authors: davis p. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D383-9. doi: 10.1093/nar/gki066. Nucleic Acids Res. 2005. PMID: 15608221 Free PMC article.
WormBase: better software, richer content.
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Harris TW, Kenny EE, Kishore R, Lawson D, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Spooner W, Tuli MA, Van Auken K, Wang D, Durbin R, Spieth J, Stein LD, Sternberg PW. Schwarz EM, et al. Among authors: davis p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D475-8. doi: 10.1093/nar/gkj061. Nucleic Acids Res. 2006. PMID: 16381915 Free PMC article.
WormBase: new content and better access.
Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J. Bieri T, et al. Among authors: davis p. Nucleic Acids Res. 2007 Jan;35(Database issue):D506-10. doi: 10.1093/nar/gkl818. Epub 2006 Nov 11. Nucleic Acids Res. 2007. PMID: 17099234 Free PMC article.
WormBase 2007.
Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW. Rogers A, et al. Among authors: davis p. Nucleic Acids Res. 2008 Jan;36(Database issue):D612-7. doi: 10.1093/nar/gkm975. Epub 2007 Nov 8. Nucleic Acids Res. 2008. PMID: 17991679 Free PMC article.
WormBase: a comprehensive resource for nematode research.
Harris TW, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen WJ, De La Cruz N, Davis P, Duesbury M, Fang R, Fernandes J, Han M, Kishore R, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW. Harris TW, et al. Among authors: davis p. Nucleic Acids Res. 2010 Jan;38(Database issue):D463-7. doi: 10.1093/nar/gkp952. Epub 2009 Nov 12. Nucleic Acids Res. 2010. PMID: 19910365 Free PMC article.
Methods and strategies for gene structure curation in WormBase.
Williams GW, Davis PA, Rogers AS, Bieri T, Ozersky P, Spieth J. Williams GW, et al. Among authors: davis pa. Database (Oxford). 2011 May 3;2011:baq039. doi: 10.1093/database/baq039. Print 2011. Database (Oxford). 2011. PMID: 21543339 Free PMC article.
WormBase 2012: more genomes, more data, new website.
Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, de la Cruz N, Duong A, Fang R, Ganesan U, Grove C, Howe K, Kadam S, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Nash B, Ozersky P, Paulini M, Raciti D, Rangarajan A, Schindelman G, Shi X, Schwarz EM, Ann Tuli M, Van Auken K, Wang D, Wang X, Williams G, Hodgkin J, Berriman M, Durbin R, Kersey P, Spieth J, Stein L, Sternberg PW. Yook K, et al. Among authors: davis p. Nucleic Acids Res. 2012 Jan;40(Database issue):D735-41. doi: 10.1093/nar/gkr954. Epub 2011 Nov 8. Nucleic Acids Res. 2012. PMID: 22067452 Free PMC article.
Automatic categorization of diverse experimental information in the bioscience literature.
Fang R, Schindelman G, Van Auken K, Fernandes J, Chen W, Wang X, Davis P, Tuli MA, Marygold SJ, Millburn G, Matthews B, Zhang H, Brown N, Gelbart WM, Sternberg PW. Fang R, et al. Among authors: davis p. BMC Bioinformatics. 2012 Jan 26;13:16. doi: 10.1186/1471-2105-13-16. BMC Bioinformatics. 2012. PMID: 22280404 Free PMC article.
4,213 results