Schäfer LV - Search Results

1

Improved Parameters for the Martini Coarse-Grained Protein Force Field.

de Jong DH, Singh G, Bennett WF, Arnarez C, Wassenaar TA, Schäfer LV, Periole X, Tieleman DP, Marrink SJ. de Jong DH, et al. Among authors: schafer lv. J Chem Theory Comput. 2013 Jan 8;9(1):687-97. doi: 10.1021/ct300646g. Epub 2012 Nov 28. J Chem Theory Comput. 2013. PMID: 26589065

2

Reconstruction of atomistic details from coarse-grained structures.

Rzepiela AJ, Schäfer LV, Goga N, Risselada HJ, De Vries AH, Marrink SJ. Rzepiela AJ, et al. Among authors: schafer lv. J Comput Chem. 2010 Apr 30;31(6):1333-43. doi: 10.1002/jcc.21415. J Comput Chem. 2010. PMID: 20087907

3

Polarizable water model for the coarse-grained MARTINI force field.

Yesylevskyy SO, Schäfer LV, Sengupta D, Marrink SJ. Yesylevskyy SO, et al. Among authors: schafer lv. PLoS Comput Biol. 2010 Jun 10;6(6):e1000810. doi: 10.1371/journal.pcbi.1000810. PLoS Comput Biol. 2010. PMID: 20548957 Free PMC article.

4

Cholesterol in bilayers with PUFA chains: doping with DMPC or POPC results in sterol reorientation and membrane-domain formation.

Kucerka N, Marquardt D, Harroun TA, Nieh MP, Wassall SR, de Jong DH, Schäfer LV, Marrink SJ, Katsaras J. Kucerka N, et al. Among authors: schafer lv. Biochemistry. 2010 Sep 7;49(35):7485-93. doi: 10.1021/bi100891z. Biochemistry. 2010. PMID: 20669961 Free article.

5

Influence of hydrophobic mismatch and amino acid composition on the lateral diffusion of transmembrane peptides.

Ramadurai S, Holt A, Schäfer LV, Krasnikov VV, Rijkers DT, Marrink SJ, Killian JA, Poolman B. Ramadurai S, et al. Among authors: schafer lv. Biophys J. 2010 Sep 8;99(5):1447-54. doi: 10.1016/j.bpj.2010.05.042. Biophys J. 2010. PMID: 20816056 Free PMC article.

6

Partitioning of lipids at domain boundaries in model membranes.

Schäfer LV, Marrink SJ. Schäfer LV, et al. Biophys J. 2010 Dec 15;99(12):L91-3. doi: 10.1016/j.bpj.2010.08.072. Biophys J. 2010. PMID: 21156123 Free PMC article.

7

Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes.

Schäfer LV, de Jong DH, Holt A, Rzepiela AJ, de Vries AH, Poolman B, Killian JA, Marrink SJ. Schäfer LV, et al. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1343-8. doi: 10.1073/pnas.1009362108. Epub 2011 Jan 4. Proc Natl Acad Sci U S A. 2011. PMID: 21205902 Free PMC article.

8

Determining equilibrium constants for dimerization reactions from molecular dynamics simulations.

De Jong DH, Schäfer LV, De Vries AH, Marrink SJ, Berendsen HJ, Grubmüller H. De Jong DH, et al. Among authors: schafer lv. J Comput Chem. 2011 Jul 15;32(9):1919-28. doi: 10.1002/jcc.21776. Epub 2011 Apr 5. J Comput Chem. 2011. PMID: 21469160 Free article.

9

Transmembrane helices can induce domain formation in crowded model membranes.

Domański J, Marrink SJ, Schäfer LV. Domański J, et al. Among authors: schafer lv. Biochim Biophys Acta. 2012 Apr;1818(4):984-94. doi: 10.1016/j.bbamem.2011.08.021. Epub 2011 Aug 22. Biochim Biophys Acta. 2012. PMID: 21884678 Free article.

10

Mixing MARTINI: electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations.

Wassenaar TA, Ingólfsson HI, Priess M, Marrink SJ, Schäfer LV. Wassenaar TA, et al. Among authors: schafer lv. J Phys Chem B. 2013 Apr 4;117(13):3516-30. doi: 10.1021/jp311533p. Epub 2013 Mar 6. J Phys Chem B. 2013. PMID: 23406326 Free article.

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