Liu JS - Search Results

1

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR.

Li W, Köster J, Xu H, Chen CH, Xiao T, Liu JS, Brown M, Liu XS. Li W, et al. Among authors: liu js, liu xs. Genome Biol. 2015 Dec 16;16:281. doi: 10.1186/s13059-015-0843-6. Genome Biol. 2015. PMID: 26673418 Free PMC article.

2

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.

Liu XS, Brutlag DL, Liu JS. Liu XS, et al. Among authors: liu js. Nat Biotechnol. 2002 Aug;20(8):835-9. doi: 10.1038/nbt717. Epub 2002 Jul 8. Nat Biotechnol. 2002. PMID: 12101404

3

Integrating regulatory motif discovery and genome-wide expression analysis.

Conlon EM, Liu XS, Lieb JD, Liu JS. Conlon EM, et al. Among authors: liu js, liu xs. Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3339-44. doi: 10.1073/pnas.0630591100. Epub 2003 Mar 7. Proc Natl Acad Sci U S A. 2003. PMID: 12626739 Free PMC article.

4

Defining a centromere-like element in Bacillus subtilis by Identifying the binding sites for the chromosome-anchoring protein RacA.

Ben-Yehuda S, Fujita M, Liu XS, Gorbatyuk B, Skoko D, Yan J, Marko JF, Liu JS, Eichenberger P, Rudner DZ, Losick R. Ben-Yehuda S, et al. Among authors: liu js, liu xs. Mol Cell. 2005 Mar 18;17(6):773-82. doi: 10.1016/j.molcel.2005.02.023. Mol Cell. 2005. PMID: 15780934 Free article.

5

A boosting approach for motif modeling using ChIP-chip data.

Hong P, Liu XS, Zhou Q, Lu X, Liu JS, Wong WH. Hong P, et al. Among authors: liu js, liu xs. Bioinformatics. 2005 Jun 1;21(11):2636-43. doi: 10.1093/bioinformatics/bti402. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817698

6

Model-based analysis of two-color arrays (MA2C).

Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS. Song JS, et al. Among authors: liu js, liu xs. Genome Biol. 2007;8(8):R178. doi: 10.1186/gb-2007-8-8-r178. Genome Biol. 2007. PMID: 17727723 Free PMC article.

7

Gene expression profiling of human breast tissue samples using SAGE-Seq.

Wu ZJ, Meyer CA, Choudhury S, Shipitsin M, Maruyama R, Bessarabova M, Nikolskaya T, Sukumar S, Schwartzman A, Liu JS, Polyak K, Liu XS. Wu ZJ, et al. Among authors: liu js, liu xs. Genome Res. 2010 Dec;20(12):1730-9. doi: 10.1101/gr.108217.110. Epub 2010 Nov 2. Genome Res. 2010. PMID: 21045080 Free PMC article.

8

MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data.

Chen Y, Meyer CA, Liu T, Li W, Liu JS, Liu XS. Chen Y, et al. Among authors: liu js, liu xs, liu t. Genome Biol. 2011;12(2):R11. doi: 10.1186/gb-2011-12-2-r11. Epub 2011 Feb 1. Genome Biol. 2011. PMID: 21284836 Free PMC article.

9

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens.

Li W, Xu H, Xiao T, Cong L, Love MI, Zhang F, Irizarry RA, Liu JS, Brown M, Liu XS. Li W, et al. Among authors: liu js, liu xs. Genome Biol. 2014;15(12):554. doi: 10.1186/s13059-014-0554-4. Genome Biol. 2014. PMID: 25476604 Free PMC article.

10

Inference of transcriptional regulation in cancers.

Jiang P, Freedman ML, Liu JS, Liu XS. Jiang P, et al. Among authors: liu js, liu xs. Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7731-6. doi: 10.1073/pnas.1424272112. Epub 2015 Jun 8. Proc Natl Acad Sci U S A. 2015. PMID: 26056275 Free PMC article.

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