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Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.
Kilianski A, Carcel P, Yao S, Roth P, Schulte J, Donarum GB, Fochler ET, Hill JM, Liem AT, Wiley MR, Ladner JT, Pfeffer BP, Elliot O, Petrosov A, Jima DD, Vallard TG, Melendrez MC, Skowronski E, Quan PL, Lipkin WI, Gibbons HS, Hirschberg DL, Palacios GF, Rosenzweig CN. Kilianski A, et al. Among authors: liem at. BMC Bioinformatics. 2015 Dec 29;16:416. doi: 10.1186/s12859-015-0840-5. BMC Bioinformatics. 2015. PMID: 26714571 Free PMC article.
Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant.
Gibbons HS, Broomall SM, McNew LA, Daligault H, Chapman C, Bruce D, Karavis M, Krepps M, McGregor PA, Hong C, Park KH, Akmal A, Feldman A, Lin JS, Chang WE, Higgs BW, Demirev P, Lindquist J, Liem A, Fochler E, Read TD, Tapia R, Johnson S, Bishop-Lilly KA, Detter C, Han C, Sozhamannan S, Rosenzweig CN, Skowronski EW. Gibbons HS, et al. PLoS One. 2011 Mar 25;6(3):e17836. doi: 10.1371/journal.pone.0017836. PLoS One. 2011. PMID: 21464989 Free PMC article.
Comparative genomics of 2009 seasonal plague (Yersinia pestis) in New Mexico.
Gibbons HS, Krepps MD, Ouellette G, Karavis M, Onischuk L, Leonard P, Broomall S, Sickler T, Betters JL, McGregor P, Donarum G, Liem A, Fochler E, McNew L, Rosenzweig CN, Skowronski E. Gibbons HS, et al. PLoS One. 2012;7(2):e31604. doi: 10.1371/journal.pone.0031604. Epub 2012 Feb 16. PLoS One. 2012. PMID: 22359605 Free PMC article.
Pathoadaptive mutations in Salmonella enterica isolated after serial passage in mice.
Koskiniemi S, Gibbons HS, Sandegren L, Anwar N, Ouellette G, Broomall S, Karavis M, McGregor P, Liem A, Fochler E, McNew L, Rosenzweig CN, Rhen M, Skowronski EW, Andersson DI. Koskiniemi S, et al. PLoS One. 2013 Jul 25;8(7):e70147. doi: 10.1371/journal.pone.0070147. Print 2013. PLoS One. 2013. PMID: 23936152 Free PMC article.
Whole-Genome Sequencing in Microbial Forensic Analysis of Gamma-Irradiated Microbial Materials.
Broomall SM, Ait Ichou M, Krepps MD, Johnsky LA, Karavis MA, Hubbard KS, Insalaco JM, Betters JL, Redmond BW, Rivers BA, Liem AT, Hill JM, Fochler ET, Roth PA, Rosenzweig CN, Skowronski EW, Gibbons HS. Broomall SM, et al. Among authors: liem at. Appl Environ Microbiol. 2015 Nov 13;82(2):596-607. doi: 10.1128/AEM.02231-15. Print 2016 Jan 15. Appl Environ Microbiol. 2015. PMID: 26567301 Free PMC article.
Putative Phenotypically Neutral Genomic Insertion Points in Prokaryotes.
Bernhards CB, Liem AT, Berk KL, Roth PA, Gibbons HS, Lux MW. Bernhards CB, et al. Among authors: liem at. ACS Synth Biol. 2022 Apr 15;11(4):1681-1685. doi: 10.1021/acssynbio.1c00531. Epub 2022 Mar 10. ACS Synth Biol. 2022. PMID: 35271248 Free PMC article.
47 results