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Page 1
Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy.
de la Rosa-Trevín JM, Quintana A, Del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas JL, Navas J, Conesa P, Kazemi M, Marabini R, Sorzano CO, Carazo JM. de la Rosa-Trevín JM, et al. Among authors: conesa p. J Struct Biol. 2016 Jul;195(1):93-9. doi: 10.1016/j.jsb.2016.04.010. Epub 2016 Apr 20. J Struct Biol. 2016. PMID: 27108186
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.
Sorzano COS, Vargas J, Otón J, de la Rosa-Trevín JM, Vilas JL, Kazemi M, Melero R, Del Caño L, Cuenca J, Conesa P, Gómez-Blanco J, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: conesa p. Biomed Res Int. 2017;2017:6482567. doi: 10.1155/2017/6482567. Epub 2017 Sep 17. Biomed Res Int. 2017. PMID: 29312997 Free PMC article. Review.
Blind estimation of DED camera gain in Electron Microscopy.
Sorzano COS, Fernández-Giménez E, Peredo-Robinson V, Vargas J, Majtner T, Caffarena G, Otón J, Vilas JL, de la Rosa-Trevín JM, Melero R, Gómez-Blanco J, Cuenca J, Del Cano L, Conesa P, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: conesa p. J Struct Biol. 2018 Aug;203(2):90-93. doi: 10.1016/j.jsb.2018.03.007. Epub 2018 Mar 15. J Struct Biol. 2018. PMID: 29551714
Using Scipion for stream image processing at Cryo-EM facilities.
Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, Del Cano L, Jiménez A, Martínez M, Melero R, Majtner T, Maluenda D, Mota J, Rancel Y, Ramírez-Aportela E, Vilas JL, Carroni M, Fleischmann S, Lindahl E, Ashton AW, Basham M, Clare DK, Savage K, Siebert CA, Sharov GG, Sorzano COS, Conesa P, Carazo JM. Gómez-Blanco J, et al. Among authors: conesa p. J Struct Biol. 2018 Dec;204(3):457-463. doi: 10.1016/j.jsb.2018.10.001. Epub 2018 Oct 5. J Struct Biol. 2018. PMID: 30296492 Free PMC article.
Validation of electron microscopy initial models via small angle X-ray scattering curves.
Jiménez A, Jonic S, Majtner T, Otón J, Vilas JL, Maluenda D, Mota J, Ramírez-Aportela E, Martínez M, Rancel Y, Segura J, Sánchez-García R, Melero R, Del Cano L, Conesa P, Skjaerven L, Marabini R, Carazo JM, Sorzano COS. Jiménez A, et al. Among authors: conesa p. Bioinformatics. 2019 Jul 15;35(14):2427-2433. doi: 10.1093/bioinformatics/bty985. Bioinformatics. 2019. PMID: 30500892
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy.
Sorzano COS, Jiménez A, Mota J, Vilas JL, Maluenda D, Martínez M, Ramírez-Aportela E, Majtner T, Segura J, Sánchez-García R, Rancel Y, Del Caño L, Conesa P, Melero R, Jonic S, Vargas J, Cazals F, Freyberg Z, Krieger J, Bahar I, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: conesa p. Acta Crystallogr F Struct Biol Commun. 2019 Jan 1;75(Pt 1):19-32. doi: 10.1107/S2053230X18015108. Epub 2019 Jan 1. Acta Crystallogr F Struct Biol Commun. 2019. PMID: 30605122 Free PMC article. Review.
Automatic local resolution-based sharpening of cryo-EM maps.
Ramírez-Aportela E, Vilas JL, Glukhova A, Melero R, Conesa P, Martínez M, Maluenda D, Mota J, Jiménez A, Vargas J, Marabini R, Sexton PM, Carazo JM, Sorzano COS. Ramírez-Aportela E, et al. Among authors: conesa p. Bioinformatics. 2020 Feb 1;36(3):765-772. doi: 10.1093/bioinformatics/btz671. Bioinformatics. 2020. PMID: 31504163 Free PMC article.
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion.
Maluenda D, Majtner T, Horvath P, Vilas JL, Jiménez-Moreno A, Mota J, Ramírez-Aportela E, Sánchez-García R, Conesa P, Del Caño L, Rancel Y, Fonseca Y, Martínez M, Sharov G, García CA, Strelak D, Melero R, Marabini R, Carazo JM, Sorzano COS. Maluenda D, et al. Among authors: conesa p. Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):882-894. doi: 10.1107/S2059798319011860. Epub 2019 Oct 1. Acta Crystallogr D Struct Biol. 2019. PMID: 31588920 Free PMC article.
44 results