Xie H - Search Results

1

Activation of Endogenous Retroviruses in Dnmt1(-/-) ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA.

Sharif J, Endo TA, Nakayama M, Karimi MM, Shimada M, Katsuyama K, Goyal P, Brind'Amour J, Sun MA, Sun Z, Ishikura T, Mizutani-Koseki Y, Ohara O, Shinkai Y, Nakanishi M, Xie H, Lorincz MC, Koseki H. Sharif J, et al. Among authors: xie h. Cell Stem Cell. 2016 Jul 7;19(1):81-94. doi: 10.1016/j.stem.2016.03.013. Epub 2016 Apr 14. Cell Stem Cell. 2016. PMID: 27151458 Free article.

2

Nonparametric Bayesian clustering to detect bipolar methylated genomic loci.

Wu X, Sun MA, Zhu H, Xie H. Wu X, et al. Among authors: xie h. BMC Bioinformatics. 2015 Jan 16;16:11. doi: 10.1186/s12859-014-0439-2. BMC Bioinformatics. 2015. PMID: 25592753 Free PMC article.

3

Mammalian Brain Development is Accompanied by a Dramatic Increase in Bipolar DNA Methylation.

Sun MA, Sun Z, Wu X, Rajaram V, Keimig D, Lim J, Zhu H, Xie H. Sun MA, et al. Among authors: xie h. Sci Rep. 2016 Sep 2;6:32298. doi: 10.1038/srep32298. Sci Rep. 2016. PMID: 27585862 Free PMC article.

4

Objective and comprehensive evaluation of bisulfite short read mapping tools.

Tran H, Porter J, Sun MA, Xie H, Zhang L. Tran H, et al. Among authors: xie h. Adv Bioinformatics. 2014;2014:472045. doi: 10.1155/2014/472045. Epub 2014 Apr 15. Adv Bioinformatics. 2014. PMID: 24839440 Free PMC article.

5

Characterization and machine learning prediction of allele-specific DNA methylation.

He J, Sun MA, Wang Z, Wang Q, Li Q, Xie H. He J, et al. Among authors: xie h. Genomics. 2015 Dec;106(6):331-9. doi: 10.1016/j.ygeno.2015.09.007. Epub 2015 Sep 25. Genomics. 2015. PMID: 26407641 Free article.

6

HBS-Tools for Hairpin Bisulfite Sequencing Data Processing and Analysis.

Sun MA, Velmurugan KR, Keimig D, Xie H. Sun MA, et al. Among authors: xie h. Adv Bioinformatics. 2015;2015:760423. doi: 10.1155/2015/760423. Epub 2015 Dec 20. Adv Bioinformatics. 2015. PMID: 26798339 Free PMC article.

7

The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation.

Zhao L, Sun MA, Li Z, Bai X, Yu M, Wang M, Liang L, Shao X, Arnovitz S, Wang Q, He C, Lu X, Chen J, Xie H. Zhao L, et al. Among authors: xie h. Genome Res. 2014 Aug;24(8):1296-307. doi: 10.1101/gr.163147.113. Epub 2014 May 16. Genome Res. 2014. PMID: 24835587 Free PMC article.

8

Deciphering the heterogeneity in DNA methylation patterns during stem cell differentiation and reprogramming.

Shao X, Zhang C, Sun MA, Lu X, Xie H. Shao X, et al. Among authors: xie h. BMC Genomics. 2014 Nov 18;15(1):978. doi: 10.1186/1471-2164-15-978. BMC Genomics. 2014. PMID: 25404570 Free PMC article.

9

A Bayesian Assignment Method for Ambiguous Bisulfite Short Reads.

Tran H, Wu X, Tithi S, Sun MA, Xie H, Zhang L. Tran H, et al. Among authors: xie h. PLoS One. 2016 Mar 24;11(3):e0151826. doi: 10.1371/journal.pone.0151826. eCollection 2016. PLoS One. 2016. PMID: 27011215 Free PMC article.

10

EGR1 recruits TET1 to shape the brain methylome during development and upon neuronal activity.

Sun Z, Xu X, He J, Murray A, Sun MA, Wei X, Wang X, McCoig E, Xie E, Jiang X, Li L, Zhu J, Chen J, Morozov A, Pickrell AM, Theus MH, Xie H. Sun Z, et al. Among authors: xie h, xie e. Nat Commun. 2019 Aug 29;10(1):3892. doi: 10.1038/s41467-019-11905-3. Nat Commun. 2019. PMID: 31467272 Free PMC article.

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