Brouard C - Search Results

1

Fast metabolite identification with Input Output Kernel Regression.

Brouard C, Shen H, Dührkop K, d'Alché-Buc F, Böcker S, Rousu J. Brouard C, et al. Bioinformatics. 2016 Jun 15;32(12):i28-i36. doi: 10.1093/bioinformatics/btw246. Bioinformatics. 2016. PMID: 27307628 Free PMC article.

2

Learning a Markov Logic network for supervised gene regulatory network inference.

Brouard C, Vrain C, Dubois J, Castel D, Debily MA, d'Alché-Buc F. Brouard C, et al. BMC Bioinformatics. 2013 Sep 12;14:273. doi: 10.1186/1471-2105-14-273. BMC Bioinformatics. 2013. PMID: 24028533 Free PMC article.

3

Machine Learning of Protein Interactions in Fungal Secretory Pathways.

Kludas J, Arvas M, Castillo S, Pakula T, Oja M, Brouard C, Jäntti J, Penttilä M, Rousu J. Kludas J, et al. Among authors: brouard c. PLoS One. 2016 Jul 21;11(7):e0159302. doi: 10.1371/journal.pone.0159302. eCollection 2016. PLoS One. 2016. PMID: 27441920 Free PMC article.

4

Critical Assessment of Small Molecule Identification 2016: automated methods.

Schymanski EL, Ruttkies C, Krauss M, Brouard C, Kind T, Dührkop K, Allen F, Vaniya A, Verdegem D, Böcker S, Rousu J, Shen H, Tsugawa H, Sajed T, Fiehn O, Ghesquière B, Neumann S. Schymanski EL, et al. Among authors: brouard c. J Cheminform. 2017 Mar 27;9(1):22. doi: 10.1186/s13321-017-0207-1. J Cheminform. 2017. PMID: 29086042 Free PMC article.

5

Liquid-chromatography retention order prediction for metabolite identification.

Bach E, Szedmak S, Brouard C, Böcker S, Rousu J. Bach E, et al. Among authors: brouard c. Bioinformatics. 2018 Sep 1;34(17):i875-i883. doi: 10.1093/bioinformatics/bty590. Bioinformatics. 2018. PMID: 30423079

6

Improved Small Molecule Identification through Learning Combinations of Kernel Regression Models.

Brouard C, Bassé A, d'Alché-Buc F, Rousu J. Brouard C, et al. Metabolites. 2019 Aug 1;9(8):160. doi: 10.3390/metabo9080160. Metabolites. 2019. PMID: 31374904 Free PMC article.

7

Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals.

Pomiès L, Brouard C, Duruflé H, Maigné É, Carré C, Gody L, Trösser F, Katsirelos G, Mangin B, Langlade NB, de Givry S. Pomiès L, et al. Among authors: brouard c. Bioinformatics. 2022 Sep 2;38(17):4127-4134. doi: 10.1093/bioinformatics/btac445. Bioinformatics. 2022. PMID: 35792837

8

Semi-supervised learning with pseudo-labeling compares favorably with large language models for regulatory sequence prediction.

Phan H, Brouard C, Mourad R. Phan H, et al. Among authors: brouard c. Brief Bioinform. 2024 Sep 23;25(6):bbae560. doi: 10.1093/bib/bbae560. Brief Bioinform. 2024. PMID: 39489607 Free PMC article.

9

Feature selection for kernel methods in systems biology.

Brouard C, Mariette J, Flamary R, Vialaneix N. Brouard C, et al. NAR Genom Bioinform. 2022 Mar 7;4(1):lqac014. doi: 10.1093/nargab/lqac014. eCollection 2022 Mar. NAR Genom Bioinform. 2022. PMID: 35265835 Free PMC article.

10

Should we really use graph neural networks for transcriptomic prediction?

Brouard C, Mourad R, Vialaneix N. Brouard C, et al. Brief Bioinform. 2024 Jan 22;25(2):bbae027. doi: 10.1093/bib/bbae027. Brief Bioinform. 2024. PMID: 38349060 Free PMC article.

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