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Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.
Bickhart DM, Watson M, Koren S, Panke-Buisse K, Cersosimo LM, Press MO, Van Tassell CP, Van Kessel JAS, Haley BJ, Kim SW, Heiner C, Suen G, Bakshy K, Liachko I, Sullivan ST, Myer PR, Ghurye J, Pop M, Weimer PJ, Phillippy AM, Smith TPL. Bickhart DM, et al. Among authors: bakshy k. Genome Biol. 2019 Aug 2;20(1):153. doi: 10.1186/s13059-019-1760-x. Genome Biol. 2019. PMID: 31375138 Free PMC article.
Development of polymorphic markers in the immune gene complex loci of cattle.
Bakshy K, Heimeier D, Schwartz JC, Glass EJ, Wilkinson S, Skuce RA, Allen AR, Young J, McClure JC, Cole JB, Null DJ, Hammond JA, Smith TPL, Bickhart DM. Bakshy K, et al. J Dairy Sci. 2021 Jun;104(6):6897-6908. doi: 10.3168/jds.2020-19809. Epub 2021 Mar 6. J Dairy Sci. 2021. PMID: 33685702 Free article.