Mei S - Search Results

1

CRISPR-DO for genome-wide CRISPR design and optimization.

Ma J, Köster J, Qin Q, Hu S, Li W, Chen C, Cao Q, Wang J, Mei S, Liu Q, Xu H, Liu XS. Ma J, et al. Among authors: mei s. Bioinformatics. 2016 Nov 1;32(21):3336-3338. doi: 10.1093/bioinformatics/btw476. Epub 2016 Jul 10. Bioinformatics. 2016. PMID: 27402906 Free PMC article.

2

CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse.

Wang Q, Huang J, Sun H, Liu J, Wang J, Wang Q, Qin Q, Mei S, Zhao C, Yang X, Liu XS, Zhang Y. Wang Q, et al. Among authors: mei s. Nucleic Acids Res. 2014 Jan;42(Database issue):D450-8. doi: 10.1093/nar/gkt1151. Epub 2013 Nov 18. Nucleic Acids Res. 2014. PMID: 24253304 Free PMC article.

3

Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles.

Wang S, Zang C, Xiao T, Fan J, Mei S, Qin Q, Wu Q, Li X, Xu K, He HH, Brown M, Meyer CA, Liu XS. Wang S, et al. Among authors: mei s. Genome Res. 2016 Oct;26(10):1417-1429. doi: 10.1101/gr.201574.115. Epub 2016 Jul 27. Genome Res. 2016. PMID: 27466232 Free PMC article.

4

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.

Qin Q, Mei S, Wu Q, Sun H, Li L, Taing L, Chen S, Li F, Liu T, Zang C, Xu H, Chen Y, Meyer CA, Zhang Y, Brown M, Long HW, Liu XS. Qin Q, et al. Among authors: mei s. BMC Bioinformatics. 2016 Oct 3;17(1):404. doi: 10.1186/s12859-016-1274-4. BMC Bioinformatics. 2016. PMID: 27716038 Free PMC article.

5

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.

Mei S, Qin Q, Wu Q, Sun H, Zheng R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA, Liu XS. Mei S, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D658-D662. doi: 10.1093/nar/gkw983. Epub 2016 Oct 26. Nucleic Acids Res. 2017. PMID: 27789702 Free PMC article.

6

Regulation of Chromatin Assembly and Cell Transformation by Formaldehyde Exposure in Human Cells.

Chen D, Fang L, Mei S, Li H, Xu X, Des Marais TL, Lu K, Liu XS, Jin C. Chen D, et al. Among authors: mei s. Environ Health Perspect. 2017 Sep 21;125(9):097019. doi: 10.1289/EHP1275. Environ Health Perspect. 2017. PMID: 28937961 Free PMC article.

7

Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer.

Mei S, Meyer CA, Zheng R, Qin Q, Wu Q, Jiang P, Li B, Shi X, Wang B, Fan J, Shih C, Brown M, Zang C, Liu XS. Mei S, et al. Cancer Res. 2017 Nov 1;77(21):e19-e22. doi: 10.1158/0008-5472.CAN-17-0327. Cancer Res. 2017. PMID: 29092931 Free PMC article.

8

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.

Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS. Zheng R, et al. Among authors: mei s. Nucleic Acids Res. 2019 Jan 8;47(D1):D729-D735. doi: 10.1093/nar/gky1094. Nucleic Acids Res. 2019. PMID: 30462313 Free PMC article.

9

Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute.

Wang B, Wang M, Zhang W, Xiao T, Chen CH, Wu A, Wu F, Traugh N, Wang X, Li Z, Mei S, Cui Y, Shi S, Lipp JJ, Hinterndorfer M, Zuber J, Brown M, Li W, Liu XS. Wang B, et al. Among authors: mei s. Nat Protoc. 2019 Mar;14(3):756-780. doi: 10.1038/s41596-018-0113-7. Epub 2019 Feb 1. Nat Protoc. 2019. PMID: 30710114 Free PMC article.

10

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.

Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J, Meyer CA, Liu XS. Qin Q, et al. Among authors: mei s. Genome Biol. 2020 Feb 7;21(1):32. doi: 10.1186/s13059-020-1934-6. Genome Biol. 2020. PMID: 32033573 Free PMC article.

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