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scphaser: haplotype inference using single-cell RNA-seq data.
Edsgärd D, Reinius B, Sandberg R. Edsgärd D, et al. Among authors: sandberg r. Bioinformatics. 2016 Oct 1;32(19):3038-40. doi: 10.1093/bioinformatics/btw484. Epub 2016 Aug 6. Bioinformatics. 2016. PMID: 27497440 Free PMC article.
We realized that single-cell RNA-seq (scRNA-seq) data are well suited for phasing genetic variants, since both transcriptional bursts and technical bottlenecks cause pronounced allelic fluctuations in individual single cells. Here we present scphaser, an R package that pha …
We realized that single-cell RNA-seq (scRNA-seq) data are well suited for phasing genetic variants, since both transcriptional bursts and te …
Full-length RNA-seq from single cells using Smart-seq2.
Picelli S, Faridani OR, Björklund AK, Winberg G, Sagasser S, Sandberg R. Picelli S, et al. Among authors: sandberg r. Nat Protoc. 2014 Jan;9(1):171-81. doi: 10.1038/nprot.2014.006. Epub 2014 Jan 2. Nat Protoc. 2014. PMID: 24385147
Adult human and mouse ovaries lack DDX4-expressing functional oogonial stem cells.
Zhang H, Panula S, Petropoulos S, Edsgärd D, Busayavalasa K, Liu L, Li X, Risal S, Shen Y, Shao J, Liu M, Li S, Zhang D, Zhang X, Gerner RR, Sheikhi M, Damdimopoulou P, Sandberg R, Douagi I, Gustafsson JÅ, Liu L, Lanner F, Hovatta O, Liu K. Zhang H, et al. Among authors: sandberg r. Nat Med. 2015 Oct;21(10):1116-8. doi: 10.1038/nm.3775. Nat Med. 2015. PMID: 26444631 No abstract available.
189 results