Oberhardt M - Search Results

1

Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction.

Auslander N, Wagner A, Oberhardt M, Ruppin E. Auslander N, et al. Among authors: oberhardt m. PLoS Comput Biol. 2016 Sep 27;12(9):e1005125. doi: 10.1371/journal.pcbi.1005125. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27673682 Free PMC article.

2

Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms.

Zarecki R, Oberhardt MA, Yizhak K, Wagner A, Shtifman Segal E, Freilich S, Henry CS, Gophna U, Ruppin E. Zarecki R, et al. PLoS One. 2014 May 27;9(5):e98372. doi: 10.1371/journal.pone.0098372. eCollection 2014. PLoS One. 2014. PMID: 24866123 Free PMC article.

3

Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.

Oberhardt MA, Zarecki R, Reshef L, Xia F, Duran-Frigola M, Schreiber R, Henry CS, Ben-Tal N, Dwyer DJ, Gophna U, Ruppin E. Oberhardt MA, et al. PLoS Comput Biol. 2016 Jan 28;12(1):e1004705. doi: 10.1371/journal.pcbi.1004705. eCollection 2016 Jan. PLoS Comput Biol. 2016. PMID: 26821166 Free PMC article.

4

Metabolic Network Prediction of Drug Side Effects.

Shaked I, Oberhardt MA, Atias N, Sharan R, Ruppin E. Shaked I, et al. Cell Syst. 2016 Mar 23;2(3):209-13. doi: 10.1016/j.cels.2016.03.001. Epub 2016 Mar 23. Cell Syst. 2016. PMID: 27135366 Free article.

5

Taming the complexity of large models.

Oberhardt M, Ruppin E. Oberhardt M, et al. EMBO Rep. 2013 Oct;14(10):848. doi: 10.1038/embor.2013.145. Epub 2013 Sep 6. EMBO Rep. 2013. PMID: 24008846 Free PMC article. No abstract available.

6

Essential Genes Embody Increased Mutational Robustness to Compensate for the Lack of Backup Genetic Redundancy.

Cohen O, Oberhardt M, Yizhak K, Ruppin E. Cohen O, et al. Among authors: oberhardt m. PLoS One. 2016 Dec 20;11(12):e0168444. doi: 10.1371/journal.pone.0168444. eCollection 2016. PLoS One. 2016. PMID: 27997585 Free PMC article.

7

Metabolically re-modeling the drug pipeline.

Oberhardt MA, Yizhak K, Ruppin E. Oberhardt MA, et al. Curr Opin Pharmacol. 2013 Oct;13(5):778-85. doi: 10.1016/j.coph.2013.05.006. Epub 2013 May 31. Curr Opin Pharmacol. 2013. PMID: 23731523 Review.

8

A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness.

Zarecki R, Oberhardt MA, Reshef L, Gophna U, Ruppin E. Zarecki R, et al. PLoS Comput Biol. 2014 Jul 17;10(7):e1003726. doi: 10.1371/journal.pcbi.1003726. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25033033 Free PMC article.

9

Harnessing the landscape of microbial culture media to predict new organism-media pairings.

Oberhardt MA, Zarecki R, Gronow S, Lang E, Klenk HP, Gophna U, Ruppin E. Oberhardt MA, et al. Nat Commun. 2015 Oct 13;6:8493. doi: 10.1038/ncomms9493. Nat Commun. 2015. PMID: 26460590 Free PMC article.

10

Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations.

Eilam O, Zarecki R, Oberhardt M, Ursell LK, Kupiec M, Knight R, Gophna U, Ruppin E. Eilam O, et al. Among authors: oberhardt m. mBio. 2014 Aug 12;5(4):e01526-14. doi: 10.1128/mBio.01526-14. mBio. 2014. PMID: 25118239 Free PMC article.

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