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Page 1
Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.
Utturkar SM, Bayer EA, Borovok I, Lamed R, Hurt RA, Land ML, Klingeman DM, Elias D, Zhou J, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD. Utturkar SM, et al. Among authors: woyke t. Genome Announc. 2016 Sep 29;4(5):e01043-16. doi: 10.1128/genomeA.01043-16. Genome Announc. 2016. PMID: 27688341 Free PMC article.
Symbiosis insights through metagenomic analysis of a microbial consortium.
Woyke T, Teeling H, Ivanova NN, Huntemann M, Richter M, Gloeckner FO, Boffelli D, Anderson IJ, Barry KW, Shapiro HJ, Szeto E, Kyrpides NC, Mussmann M, Amann R, Bergin C, Ruehland C, Rubin EM, Dubilier N. Woyke T, et al. Nature. 2006 Oct 26;443(7114):950-5. doi: 10.1038/nature05192. Epub 2006 Sep 17. Nature. 2006. PMID: 16980956
One bacterial cell, one complete genome.
Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF. Woyke T, et al. PLoS One. 2010 Apr 23;5(4):e10314. doi: 10.1371/journal.pone.0010314. PLoS One. 2010. PMID: 20428247 Free PMC article.
Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus.
Blumer-Schuette SE, Ozdemir I, Mistry D, Lucas S, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Land ML, Hauser LJ, Woyke T, Mikhailova N, Pati A, Kyrpides NC, Ivanova N, Detter JC, Walston-Davenport K, Han S, Adams MW, Kelly RM. Blumer-Schuette SE, et al. Among authors: woyke t. J Bacteriol. 2011 Mar;193(6):1483-4. doi: 10.1128/JB.01515-10. Epub 2011 Jan 7. J Bacteriol. 2011. PMID: 21216991 Free PMC article.
Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132.
Brown SD, Gilmour CC, Kucken AM, Wall JD, Elias DA, Brandt CC, Podar M, Chertkov O, Held B, Bruce DC, Detter JC, Tapia R, Han CS, Goodwin LA, Cheng JF, Pitluck S, Woyke T, Mikhailova N, Ivanova NN, Han J, Lucas S, Lapidus AL, Land ML, Hauser LJ, Palumbo AV. Brown SD, et al. Among authors: woyke t. J Bacteriol. 2011 Apr;193(8):2078-9. doi: 10.1128/JB.00170-11. Epub 2011 Feb 25. J Bacteriol. 2011. PMID: 21357488 Free PMC article.
Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.
Feinberg L, Foden J, Barrett T, Davenport KW, Bruce D, Detter C, Tapia R, Han C, Lapidus A, Lucas S, Cheng JF, Pitluck S, Woyke T, Ivanova N, Mikhailova N, Land M, Hauser L, Argyros DA, Goodwin L, Hogsett D, Caiazza N. Feinberg L, et al. Among authors: woyke t. J Bacteriol. 2011 Jun;193(11):2906-7. doi: 10.1128/JB.00322-11. Epub 2011 Apr 1. J Bacteriol. 2011. PMID: 21460082 Free PMC article.
Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay.
Brown SD, Wall JD, Kucken AM, Gilmour CC, Podar M, Brandt CC, Teshima H, Detter JC, Han CS, Land ML, Lucas S, Han J, Pennacchio L, Nolan M, Pitluck S, Woyke T, Goodwin L, Palumbo AV, Elias DA. Brown SD, et al. Among authors: woyke t. J Bacteriol. 2011 Aug;193(15):4037-8. doi: 10.1128/JB.05223-11. Epub 2011 Jun 3. J Bacteriol. 2011. PMID: 21642452 Free PMC article.
Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).
Munk AC, Lapidus A, Lucas S, Nolan M, Tice H, Cheng JF, Del Rio TG, Goodwin L, Pitluck S, Liolios K, Huntemann M, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Tapia R, Han C, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Yasawong M, Brambilla EM, Rohde M, Sikorski J, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Munk AC, et al. Among authors: woyke t. Stand Genomic Sci. 2011 Jul 1;4(3):342-51. doi: 10.4056/sigs.1894556. Epub 2011 Jun 30. Stand Genomic Sci. 2011. PMID: 21886861 Free PMC article.
Complete genome sequence of Haliscomenobacter hydrossis type strain (O).
Daligault H, Lapidus A, Zeytun A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Verbarg S, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Daligault H, et al. Among authors: woyke t. Stand Genomic Sci. 2011 Jul 1;4(3):352-60. doi: 10.4056/sigs.1964579. Epub 2011 Jun 30. Stand Genomic Sci. 2011. PMID: 21886862 Free PMC article.
Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).
Pati A, Gronow S, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Mavromatis K, Mikhailova N, Huntemann M, Chen A, Palaniappan K, Land M, Hauser L, Detter JC, Brambilla EM, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Ivanova N. Pati A, et al. Among authors: woyke t. Stand Genomic Sci. 2011 Oct 15;5(1):41-9. doi: 10.4056/sigs.2164949. Epub 2011 Sep 23. Stand Genomic Sci. 2011. PMID: 22180809 Free PMC article.
620 results