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Page 1
Oasis: online analysis of small RNA deep sequencing data.
Capece V, Garcia Vizcaino JC, Vidal R, Rahman RU, Pena Centeno T, Shomroni O, Suberviola I, Fischer A, Bonn S. Capece V, et al. Among authors: rahman ru. Bioinformatics. 2015 Jul 1;31(13):2205-7. doi: 10.1093/bioinformatics/btv113. Epub 2015 Feb 19. Bioinformatics. 2015. PMID: 25701573 Free PMC article.
DNA methylation changes in plasticity genes accompany the formation and maintenance of memory.
Halder R, Hennion M, Vidal RO, Shomroni O, Rahman RU, Rajput A, Centeno TP, van Bebber F, Capece V, Garcia Vizcaino JC, Schuetz AL, Burkhardt S, Benito E, Navarro Sala M, Javan SB, Haass C, Schmid B, Fischer A, Bonn S. Halder R, et al. Among authors: rahman ru. Nat Neurosci. 2016 Jan;19(1):102-10. doi: 10.1038/nn.4194. Epub 2015 Dec 14. Nat Neurosci. 2016. PMID: 26656643
The landscape of human mutually exclusive splicing.
Hatje K, Rahman RU, Vidal RO, Simm D, Hammesfahr B, Bansal V, Rajput A, Mickael ME, Sun T, Bonn S, Kollmar M. Hatje K, et al. Among authors: rahman ru. Mol Syst Biol. 2017 Dec 14;13(12):959. doi: 10.15252/msb.20177728. Mol Syst Biol. 2017. PMID: 29242366 Free PMC article.
Oasis 2: improved online analysis of small RNA-seq data.
Rahman RU, Gautam A, Bethune J, Sattar A, Fiosins M, Magruder DS, Capece V, Shomroni O, Bonn S. Rahman RU, et al. BMC Bioinformatics. 2018 Feb 14;19(1):54. doi: 10.1186/s12859-018-2047-z. BMC Bioinformatics. 2018. PMID: 29444641 Free PMC article.
Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions.
Fornasiero EF, Mandad S, Wildhagen H, Alevra M, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Sakib MS, Fard MK, Kirli K, Centeno TP, Vidal RO, Rahman RU, Benito E, Fischer A, Dennerlein S, Rehling P, Feussner I, Bonn S, Simons M, Urlaub H, Rizzoli SO. Fornasiero EF, et al. Among authors: rahman ru. Nat Commun. 2018 Oct 12;9(1):4230. doi: 10.1038/s41467-018-06519-0. Nat Commun. 2018. PMID: 30315172 Free PMC article.
The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain.
Mandad S, Rahman RU, Centeno TP, Vidal RO, Wildhagen H, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Kirli K, Benito E, Fischer A, Yousefi RY, Dennerlein S, Rehling P, Feussner I, Urlaub H, Bonn S, Rizzoli SO, Fornasiero EF. Mandad S, et al. Among authors: rahman ru. Sci Rep. 2018 Nov 15;8(1):16913. doi: 10.1038/s41598-018-35277-8. Sci Rep. 2018. PMID: 30443017 Free PMC article.
DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal and Differentiation.
Wanner N, Vornweg J, Combes A, Wilson S, Plappert J, Rafflenbeul G, Puelles VG, Rahman RU, Liwinski T, Lindner S, Grahammer F, Kretz O, Wlodek ME, Romano T, Moritz KM, Boerries M, Busch H, Bonn S, Little MH, Bechtel-Walz W, Huber TB. Wanner N, et al. Among authors: rahman ru. J Am Soc Nephrol. 2019 Jan;30(1):63-78. doi: 10.1681/ASN.2018070736. Epub 2018 Dec 5. J Am Soc Nephrol. 2019. PMID: 30518531 Free PMC article.
SEAweb: the small RNA Expression Atlas web application.
Rahman RU, Liebhoff AM, Bansal V, Fiosins M, Rajput A, Sattar A, Magruder DS, Madan S, Sun T, Gautam A, Heins S, Liwinski T, Bethune J, Trenkwalder C, Fluck J, Mollenhauer B, Bonn S. Rahman RU, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D204-D219. doi: 10.1093/nar/gkz869. Nucleic Acids Res. 2020. PMID: 31598718 Free PMC article.
36 results