Simon JM - Search Results

1

Widespread Chromatin Accessibility at Repetitive Elements Links Stem Cells with Human Cancer.

Gomez NC, Hepperla AJ, Dumitru R, Simon JM, Fang F, Davis IJ. Gomez NC, et al. Among authors: simon jm. Cell Rep. 2016 Nov 1;17(6):1607-1620. doi: 10.1016/j.celrep.2016.10.011. Cell Rep. 2016. PMID: 27806299 Free PMC article.

2

A map of open chromatin in human pancreatic islets.

Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, Fogarty MP, Panhuis TM, Mieczkowski P, Secchi A, Bosco D, Berney T, Montanya E, Mohlke KL, Lieb JD, Ferrer J. Gaulton KJ, et al. Among authors: simon jm. Nat Genet. 2010 Mar;42(3):255-9. doi: 10.1038/ng.530. Epub 2010 Jan 31. Nat Genet. 2010. PMID: 20118932 Free PMC article.

3

Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription.

Patel M, Simon JM, Iglesia MD, Wu SB, McFadden AW, Lieb JD, Davis IJ. Patel M, et al. Among authors: simon jm. Genome Res. 2012 Feb;22(2):259-70. doi: 10.1101/gr.125666.111. Epub 2011 Nov 15. Genome Res. 2012. PMID: 22086061 Free PMC article.

4

Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA.

Simon JM, Giresi PG, Davis IJ, Lieb JD. Simon JM, et al. Nat Protoc. 2012 Jan 19;7(2):256-67. doi: 10.1038/nprot.2011.444. Nat Protoc. 2012. PMID: 22262007 Free PMC article.

5

A detailed protocol for formaldehyde-assisted isolation of regulatory elements (FAIRE).

Simon JM, Giresi PG, Davis IJ, Lieb JD. Simon JM, et al. Curr Protoc Mol Biol. 2013;Chapter 21:Unit21.26. doi: 10.1002/0471142727.mb2126s102. Curr Protoc Mol Biol. 2013. PMID: 23547014

6

The open chromatin landscape of Kaposi's sarcoma-associated herpesvirus.

Hilton IB, Simon JM, Lieb JD, Davis IJ, Damania B, Dittmer DP. Hilton IB, et al. Among authors: simon jm. J Virol. 2013 Nov;87(21):11831-42. doi: 10.1128/JVI.01685-13. Epub 2013 Aug 28. J Virol. 2013. PMID: 23986576 Free PMC article.

7

Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects.

Simon JM, Hacker KE, Singh D, Brannon AR, Parker JS, Weiser M, Ho TH, Kuan PF, Jonasch E, Furey TS, Prins JF, Lieb JD, Rathmell WK, Davis IJ. Simon JM, et al. Genome Res. 2014 Feb;24(2):241-50. doi: 10.1101/gr.158253.113. Epub 2013 Oct 24. Genome Res. 2014. PMID: 24158655 Free PMC article.

8

Loss of Arp2/3 induces an NF-κB-dependent, nonautonomous effect on chemotactic signaling.

Wu C, Haynes EM, Asokan SB, Simon JM, Sharpless NE, Baldwin AS, Davis IJ, Johnson GL, Bear JE. Wu C, et al. Among authors: simon jm. J Cell Biol. 2013 Dec 23;203(6):907-16. doi: 10.1083/jcb.201306032. J Cell Biol. 2013. PMID: 24344184 Free PMC article.

9

A chemical tool for in vitro and in vivo precipitation of lysine methyltransferase G9a.

Konze KD, Pattenden SG, Liu F, Barsyte-Lovejoy D, Li F, Simon JM, Davis IJ, Vedadi M, Jin J. Konze KD, et al. Among authors: simon jm. ChemMedChem. 2014 Mar;9(3):549-53. doi: 10.1002/cmdc.201300450. Epub 2014 Jan 17. ChemMedChem. 2014. PMID: 24443078 Free PMC article.

10

PTEN deficiency mediates a reciprocal response to IGFI and mTOR inhibition.

Patel M, Gomez NC, McFadden AW, Moats-Staats BM, Wu S, Rojas A, Sapp T, Simon JM, Smith SV, Kaiser-Rogers K, Davis IJ. Patel M, et al. Among authors: simon jm. Mol Cancer Res. 2014 Nov;12(11):1610-20. doi: 10.1158/1541-7786.MCR-14-0006. Epub 2014 Jul 3. Mol Cancer Res. 2014. PMID: 24994750 Free PMC article.

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