Darnell CL - Search Results

1

Detecting differential growth of microbial populations with Gaussian process regression.

Tonner PD, Darnell CL, Engelhardt BE, Schmid AK. Tonner PD, et al. Among authors: darnell cl. Genome Res. 2017 Feb;27(2):320-333. doi: 10.1101/gr.210286.116. Epub 2016 Nov 18. Genome Res. 2017. PMID: 27864351 Free PMC article.

2

Systems biology approaches to defining transcription regulatory networks in halophilic archaea.

Darnell CL, Schmid AK. Darnell CL, et al. Methods. 2015 Sep 15;86:102-14. doi: 10.1016/j.ymeth.2015.04.034. Epub 2015 May 12. Methods. 2015. PMID: 25976837

3

Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis.

Darnell CL, Tonner PD, Gulli JG, Schmidler SC, Schmid AK. Darnell CL, et al. mSystems. 2017 Sep 19;2(5):e00032-17. doi: 10.1128/mSystems.00032-17. eCollection 2017 Sep-Oct. mSystems. 2017. PMID: 28951888 Free PMC article.

4

Transcriptional Regulation in Archaea: From Individual Genes to Global Regulatory Networks.

Martinez-Pastor M, Tonner PD, Darnell CL, Schmid AK. Martinez-Pastor M, et al. Among authors: darnell cl. Annu Rev Genet. 2017 Nov 27;51:143-170. doi: 10.1146/annurev-genet-120116-023413. Annu Rev Genet. 2017. PMID: 29178818 Review.

5

Copy number variation is associated with gene expression change in archaea.

Dulmage KA, Darnell CL, Vreugdenhil A, Schmid AK. Dulmage KA, et al. Among authors: darnell cl. Microb Genom. 2018 Sep;4(9):e000210. doi: 10.1099/mgen.0.000210. Epub 2018 Aug 24. Microb Genom. 2018. PMID: 30142055 Free PMC article.

6

N-Glycosylation Is Important for Halobacterium salinarum Archaellin Expression, Archaellum Assembly and Cell Motility.

Zaretsky M, Darnell CL, Schmid AK, Eichler J. Zaretsky M, et al. Among authors: darnell cl. Front Microbiol. 2019 Jun 18;10:1367. doi: 10.3389/fmicb.2019.01367. eCollection 2019. Front Microbiol. 2019. PMID: 31275283 Free PMC article.

7

The Ribbon-Helix-Helix Domain Protein CdrS Regulates the Tubulin Homolog ftsZ2 To Control Cell Division in Archaea.

Darnell CL, Zheng J, Wilson S, Bertoli RM, Bisson-Filho AW, Garner EC, Schmid AK. Darnell CL, et al. mBio. 2020 Aug 11;11(4):e01007-20. doi: 10.1128/mBio.01007-20. mBio. 2020. PMID: 32788376 Free PMC article.

8

A Bayesian non-parametric mixed-effects model of microbial growth curves.

Tonner PD, Darnell CL, Bushell FML, Lund PA, Schmid AK, Schmidler SC. Tonner PD, et al. Among authors: darnell cl. PLoS Comput Biol. 2020 Oct 26;16(10):e1008366. doi: 10.1371/journal.pcbi.1008366. eCollection 2020 Oct. PLoS Comput Biol. 2020. PMID: 33104703 Free PMC article.

9

The Hypersaline Archaeal Histones HpyA and HstA Are DNA Binding Proteins That Defy Categorization According to Commonly Used Functional Criteria.

Sakrikar S, Hackley RK, Martinez-Pastor M, Darnell CL, Vreugdenhil A, Schmid AK. Sakrikar S, et al. Among authors: darnell cl. mBio. 2023 Apr 25;14(2):e0344922. doi: 10.1128/mbio.03449-22. Epub 2023 Feb 13. mBio. 2023. PMID: 36779711 Free PMC article.

10

TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii.

Hackley RK, Hwang S, Herb JT, Bhanap P, Lam K, Vreugdenhil A, Darnell CL, Pastor MM, Martin JH, Maupin-Furlow JA, Schmid AK. Hackley RK, et al. Among authors: darnell cl. Mol Microbiol. 2024 Apr;121(4):742-766. doi: 10.1111/mmi.15225. Epub 2024 Jan 11. Mol Microbiol. 2024. PMID: 38204420

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