Lim DA - Search Results

1

Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas.

Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. Müller S, et al. Among authors: lim da. Mol Syst Biol. 2016 Nov 25;12(11):889. doi: 10.15252/msb.20166969. Mol Syst Biol. 2016. PMID: 27888226 Free PMC article.

2

Normalization, bias correction, and peak calling for ChIP-seq.

Diaz A, Park K, Lim DA, Song JS. Diaz A, et al. Among authors: lim da. Stat Appl Genet Mol Biol. 2012 Mar 31;11(3):Article 9. doi: 10.1515/1544-6115.1750. Stat Appl Genet Mol Biol. 2012. PMID: 22499706 Free PMC article.

3

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

Ramos AD, Diaz A, Nellore A, Delgado RN, Park KY, Gonzales-Roybal G, Oldham MC, Song JS, Lim DA. Ramos AD, et al. Among authors: lim da. Cell Stem Cell. 2013 May 2;12(5):616-28. doi: 10.1016/j.stem.2013.03.003. Epub 2013 Apr 11. Cell Stem Cell. 2013. PMID: 23583100 Free PMC article.

4

Activation of neuronal gene expression by the JMJD3 demethylase is required for postnatal and adult brain neurogenesis.

Park DH, Hong SJ, Salinas RD, Liu SJ, Sun SW, Sgualdino J, Testa G, Matzuk MM, Iwamori N, Lim DA. Park DH, et al. Among authors: lim da. Cell Rep. 2014 Sep 11;8(5):1290-9. doi: 10.1016/j.celrep.2014.07.060. Epub 2014 Aug 28. Cell Rep. 2014. PMID: 25176653 Free PMC article.

5

The Ink4a/Arf locus is a barrier to direct neuronal transdifferentiation.

Price JD, Park KY, Chen J, Salinas RD, Cho MJ, Kriegstein AR, Lim DA. Price JD, et al. Among authors: lim da. J Neurosci. 2014 Sep 10;34(37):12560-7. doi: 10.1523/JNEUROSCI.3159-13.2014. J Neurosci. 2014. PMID: 25209293 Free PMC article.

6

The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.

Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz C, Salinas RD, Zarabi H, Kriegstein AR, Lim DA. Ramos AD, et al. Among authors: lim da. Cell Stem Cell. 2015 Apr 2;16(4):439-447. doi: 10.1016/j.stem.2015.02.007. Epub 2015 Mar 19. Cell Stem Cell. 2015. PMID: 25800779 Free PMC article.

7

Molecular identity of human outer radial glia during cortical development.

Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. Pollen AA, et al. Among authors: lim da. Cell. 2015 Sep 24;163(1):55-67. doi: 10.1016/j.cell.2015.09.004. Cell. 2015. PMID: 26406371 Free PMC article.

8

Single-cell analysis of long non-coding RNAs in the developing human neocortex.

Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. Liu SJ, et al. Among authors: lim da. Genome Biol. 2016 Apr 14;17:67. doi: 10.1186/s13059-016-0932-1. Genome Biol. 2016. PMID: 27081004 Free PMC article.

9

SCell: integrated analysis of single-cell RNA-seq data.

Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. Diaz A, et al. Among authors: lim da. Bioinformatics. 2016 Jul 15;32(14):2219-20. doi: 10.1093/bioinformatics/btw201. Epub 2016 Apr 19. Bioinformatics. 2016. PMID: 27153637 Free PMC article.

10

CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells.

Liu SJ, Horlbeck MA, Cho SW, Birk HS, Malatesta M, He D, Attenello FJ, Villalta JE, Cho MY, Chen Y, Mandegar MA, Olvera MP, Gilbert LA, Conklin BR, Chang HY, Weissman JS, Lim DA. Liu SJ, et al. Among authors: lim da. Science. 2017 Jan 6;355(6320):aah7111. doi: 10.1126/science.aah7111. Epub 2016 Dec 15. Science. 2017. PMID: 27980086 Free PMC article.

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