Zhang B - Search Results

1

CanProVar 2.0: An Updated Database of Human Cancer Proteome Variation.

Zhang M, Wang B, Xu J, Wang X, Xie L, Zhang B, Li Y, Li J. Zhang M, et al. Among authors: zhang b. J Proteome Res. 2017 Feb 3;16(2):421-432. doi: 10.1021/acs.jproteome.6b00505. Epub 2016 Dec 15. J Proteome Res. 2017. PMID: 27977206 Free PMC article.

2

Network-assisted protein identification and data interpretation in shotgun proteomics.

Li J, Zimmerman LJ, Park BH, Tabb DL, Liebler DC, Zhang B. Li J, et al. Among authors: zhang b. Mol Syst Biol. 2009;5:303. doi: 10.1038/msb.2009.54. Epub 2009 Aug 18. Mol Syst Biol. 2009. PMID: 19690572 Free PMC article.

3

CanProVar: a human cancer proteome variation database.

Li J, Duncan DT, Zhang B. Li J, et al. Among authors: zhang b. Hum Mutat. 2010 Mar;31(3):219-28. doi: 10.1002/humu.21176. Hum Mutat. 2010. PMID: 20052754 Free PMC article.

4

A bioinformatics workflow for variant peptide detection in shotgun proteomics.

Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B. Li J, et al. Among authors: zhang b. Mol Cell Proteomics. 2011 May;10(5):M110.006536. doi: 10.1074/mcp.M110.006536. Epub 2011 Mar 9. Mol Cell Proteomics. 2011. PMID: 21389108 Free PMC article.

5

Protein identification using customized protein sequence databases derived from RNA-Seq data.

Wang X, Slebos RJ, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B. Wang X, et al. Among authors: zhang b. J Proteome Res. 2012 Feb 3;11(2):1009-17. doi: 10.1021/pr200766z. Epub 2011 Dec 14. J Proteome Res. 2012. PMID: 22103967 Free PMC article.

6

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.

Wang X, Zhang B. Wang X, et al. Among authors: zhang b. Bioinformatics. 2013 Dec 15;29(24):3235-7. doi: 10.1093/bioinformatics/btt543. Epub 2013 Sep 20. Bioinformatics. 2013. PMID: 24058055 Free PMC article.

7

Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair.

Halvey PJ, Wang X, Wang J, Bhat AA, Dhawan P, Li M, Zhang B, Liebler DC, Slebos RJ. Halvey PJ, et al. Among authors: zhang b. Cancer Res. 2014 Jan 1;74(1):387-97. doi: 10.1158/0008-5472.CAN-13-2488. Epub 2013 Nov 18. Cancer Res. 2014. PMID: 24247723 Free PMC article.

8

Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.

Wang X, Zhang B. Wang X, et al. Among authors: zhang b. J Proteome Res. 2014 Jun 6;13(6):2715-23. doi: 10.1021/pr500194t. Epub 2014 May 12. J Proteome Res. 2014. PMID: 24792918 Free PMC article. Review.

9

Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.

Wang X, Liu Q, Zhang B. Wang X, et al. Among authors: zhang b. Proteomics. 2014 Dec;14(23-24):2676-87. doi: 10.1002/pmic.201400184. Epub 2014 Nov 17. Proteomics. 2014. PMID: 25266668 Free PMC article.

10

Nuclear factor of activated T-cell activity is associated with metastatic capacity in colon cancer.

Tripathi MK, Deane NG, Zhu J, An H, Mima S, Wang X, Padmanabhan S, Shi Z, Prodduturi N, Ciombor KK, Chen X, Washington MK, Zhang B, Beauchamp RD. Tripathi MK, et al. Among authors: zhang b. Cancer Res. 2014 Dec 1;74(23):6947-57. doi: 10.1158/0008-5472.CAN-14-1592. Epub 2014 Oct 15. Cancer Res. 2014. PMID: 25320007 Free PMC article.

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