Brodin J - Search Results

1

Error rates, PCR recombination, and sampling depth in HIV-1 whole genome deep sequencing.

Zanini F, Brodin J, Albert J, Neher RA. Zanini F, et al. Among authors: brodin j. Virus Res. 2017 Jul 15;239:106-114. doi: 10.1016/j.virusres.2016.12.009. Epub 2016 Dec 27. Virus Res. 2017. PMID: 28039047 Review.

2

Challenges with using primer IDs to improve accuracy of next generation sequencing.

Brodin J, Hedskog C, Heddini A, Benard E, Neher RA, Mild M, Albert J. Brodin J, et al. PLoS One. 2015 Mar 5;10(3):e0119123. doi: 10.1371/journal.pone.0119123. eCollection 2015. PLoS One. 2015. PMID: 25741706 Free PMC article.

3

Population genomics of intrapatient HIV-1 evolution.

Zanini F, Brodin J, Thebo L, Lanz C, Bratt G, Albert J, Neher RA. Zanini F, et al. Among authors: brodin j. Elife. 2015 Dec 11;4:e11282. doi: 10.7554/eLife.11282. Elife. 2015. PMID: 26652000 Free PMC article.

4

Establishment and stability of the latent HIV-1 DNA reservoir.

Brodin J, Zanini F, Thebo L, Lanz C, Bratt G, Neher RA, Albert J. Brodin J, et al. Elife. 2016 Nov 15;5:e18889. doi: 10.7554/eLife.18889. Elife. 2016. PMID: 27855060 Free PMC article.

5

In vivo mutation rates and the landscape of fitness costs of HIV-1.

Zanini F, Puller V, Brodin J, Albert J, Neher RA. Zanini F, et al. Among authors: brodin j. Virus Evol. 2017 Mar 2;3(1):vex003. doi: 10.1093/ve/vex003. eCollection 2017 Jan. Virus Evol. 2017. PMID: 28458914 Free PMC article.

6

PCR-induced transitions are the major source of error in cleaned ultra-deep pyrosequencing data.

Brodin J, Mild M, Hedskog C, Sherwood E, Leitner T, Andersson B, Albert J. Brodin J, et al. PLoS One. 2013 Jul 23;8(7):e70388. doi: 10.1371/journal.pone.0070388. Print 2013. PLoS One. 2013. PMID: 23894647 Free PMC article.

7

Longitudinal ultradeep characterization of HIV type 1 R5 and X4 subpopulations in patients followed from primary infection to coreceptor switch.

Hedskog C, Brodin J, Heddini A, Bratt G, Albert J, Mild M. Hedskog C, et al. Among authors: brodin j. AIDS Res Hum Retroviruses. 2013 Sep;29(9):1237-44. doi: 10.1089/AID.2012.0349. Epub 2013 Jul 5. AIDS Res Hum Retroviruses. 2013. PMID: 23745959

8

Therapy failure resulting from superinfection by a drug-resistant HIV variant.

Pingen M, Nouwen JL, Dinant S, Albert J, Mild M, Brodin J, Simen BB, Walsh S, Kayser M, van der Ende ME, Schutten M, Boucher CA. Pingen M, et al. Among authors: brodin j. Antivir Ther. 2012;17(8):1621-5. doi: 10.3851/IMP2267. Epub 2012 Jul 31. Antivir Ther. 2012. PMID: 22846173

9

A multiple-alignment based primer design algorithm for genetically highly variable DNA targets.

Brodin J, Krishnamoorthy M, Athreya G, Fischer W, Hraber P, Gleasner C, Green L, Korber B, Leitner T. Brodin J, et al. BMC Bioinformatics. 2013 Aug 21;14:255. doi: 10.1186/1471-2105-14-255. BMC Bioinformatics. 2013. PMID: 23965160 Free PMC article.

10

Defining the Structure of a Protein-Spherical Nucleic Acid Conjugate and Its Counterionic Cloud.

Krishnamoorthy K, Hoffmann K, Kewalramani S, Brodin JD, Moreau LM, Mirkin CA, Olvera de la Cruz M, Bedzyk MJ. Krishnamoorthy K, et al. Among authors: brodin jd. ACS Cent Sci. 2018 Mar 28;4(3):378-386. doi: 10.1021/acscentsci.7b00577. Epub 2018 Mar 13. ACS Cent Sci. 2018. PMID: 29632884 Free PMC article.

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