Keskin DB - Search Results

1

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction.

Abelin JG, Keskin DB, Sarkizova S, Hartigan CR, Zhang W, Sidney J, Stevens J, Lane W, Zhang GL, Eisenhaure TM, Clauser KR, Hacohen N, Rooney MS, Carr SA, Wu CJ. Abelin JG, et al. Among authors: keskin db. Immunity. 2017 Feb 21;46(2):315-326. doi: 10.1016/j.immuni.2017.02.007. Immunity. 2017. PMID: 28228285 Free PMC article.

2

Diverse patterns of T-cell response against multiple newly identified human Y chromosome-encoded minor histocompatibility epitopes.

Ofran Y, Kim HT, Brusic V, Blake L, Mandrell M, Wu CJ, Sarantopoulos S, Bellucci R, Keskin DB, Soiffer RJ, Antin JH, Ritz J. Ofran Y, et al. Among authors: keskin db. Clin Cancer Res. 2010 Mar 1;16(5):1642-51. doi: 10.1158/1078-0432.CCR-09-2701. Epub 2010 Feb 16. Clin Cancer Res. 2010. PMID: 20160060 Free PMC article.

3

MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles.

Zhang GL, DeLuca DS, Keskin DB, Chitkushev L, Zlateva T, Lund O, Reinherz EL, Brusic V. Zhang GL, et al. Among authors: keskin db. J Immunol Methods. 2011 Nov 30;374(1-2):53-61. doi: 10.1016/j.jim.2010.11.009. Epub 2010 Dec 2. J Immunol Methods. 2011. PMID: 21130094 Free PMC article.

4

Dana-Farber repository for machine learning in immunology.

Zhang GL, Lin HH, Keskin DB, Reinherz EL, Brusic V. Zhang GL, et al. Among authors: keskin db. J Immunol Methods. 2011 Nov 30;374(1-2):18-25. doi: 10.1016/j.jim.2011.07.007. Epub 2011 Jul 18. J Immunol Methods. 2011. PMID: 21782820 Free PMC article.

5

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments.

DeLuca DS, Keskin DB, Zhang GL, Reinherz EL, Brusic V. DeLuca DS, et al. Among authors: keskin db. BMC Bioinformatics. 2011;12 Suppl 13(Suppl 13):S6. doi: 10.1186/1471-2105-12-S13-S6. Epub 2011 Nov 30. BMC Bioinformatics. 2011. PMID: 22373288 Free PMC article.

6

Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using Peptide block entropy.

Olsen LR, Zhang GL, Keskin DB, Reinherz EL, Brusic V. Olsen LR, et al. Among authors: keskin db. Front Immunol. 2011 Dec 20;2:69. doi: 10.3389/fimmu.2011.00069. eCollection 2011. Front Immunol. 2011. PMID: 22566858 Free PMC article.

7

Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients.

Cai A, Keskin DB, DeLuca DS, Alonso A, Zhang W, Zhang GL, Hammond NN, Nardi V, Stone RM, Neuberg D, Sidney J, Brusic V, Wu CJ. Cai A, et al. Among authors: keskin db. Clin Cancer Res. 2012 Oct 15;18(20):5761-72. doi: 10.1158/1078-0432.CCR-12-1182. Epub 2012 Aug 21. Clin Cancer Res. 2012. PMID: 22912393 Free PMC article.

8

HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology.

Zhang GL, Riemer AB, Keskin DB, Chitkushev L, Reinherz EL, Brusic V. Zhang GL, et al. Among authors: keskin db. Database (Oxford). 2014 Apr 4;2014:bau031. doi: 10.1093/database/bau031. Print 2014. Database (Oxford). 2014. PMID: 24705205 Free PMC article.

9

Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia.

Rajasagi M, Shukla SA, Fritsch EF, Keskin DB, DeLuca D, Carmona E, Zhang W, Sougnez C, Cibulskis K, Sidney J, Stevenson K, Ritz J, Neuberg D, Brusic V, Gabriel S, Lander ES, Getz G, Hacohen N, Wu CJ. Rajasagi M, et al. Among authors: keskin db. Blood. 2014 Jul 17;124(3):453-62. doi: 10.1182/blood-2014-04-567933. Epub 2014 Jun 2. Blood. 2014. PMID: 24891321 Free PMC article.

10

Human leukocyte antigen typing using a knowledge base coupled with a high-throughput oligonucleotide probe array analysis.

Zhang GL, Keskin DB, Lin HN, Lin HH, DeLuca DS, Leppanen S, Milford EL, Reinherz EL, Brusic V. Zhang GL, et al. Among authors: keskin db. Front Immunol. 2014 Nov 27;5:597. doi: 10.3389/fimmu.2014.00597. eCollection 2014. Front Immunol. 2014. PMID: 25505899 Free PMC article.

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