Nishimura Y - Search Results

1

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean.

Nishimura Y, Watai H, Honda T, Mihara T, Omae K, Roux S, Blanc-Mathieu R, Yamamoto K, Hingamp P, Sako Y, Sullivan MB, Goto S, Ogata H, Yoshida T. Nishimura Y, et al. mSphere. 2017 Mar 1;2(2):e00359-16. doi: 10.1128/mSphere.00359-16. eCollection 2017 Mar-Apr. mSphere. 2017. PMID: 28261669 Free PMC article.

2

Genome-wide analysis of plant UGT family based on sequence and substrate information.

Nishimura Y, Tokimatsu T, Kotera M, Goto S, Kanehisa M. Nishimura Y, et al. Genome Inform. 2010;24:127-38. Genome Inform. 2010. PMID: 22081595 Free article.

3

Drug target prediction using adverse event report systems: a pharmacogenomic approach.

Takarabe M, Kotera M, Nishimura Y, Goto S, Yamanishi Y. Takarabe M, et al. Among authors: nishimura y. Bioinformatics. 2012 Sep 15;28(18):i611-i618. doi: 10.1093/bioinformatics/bts413. Bioinformatics. 2012. PMID: 22962489 Free PMC article.

4

Linking Virus Genomes with Host Taxonomy.

Mihara T, Nishimura Y, Shimizu Y, Nishiyama H, Yoshikawa G, Uehara H, Hingamp P, Goto S, Ogata H. Mihara T, et al. Among authors: nishimura y. Viruses. 2016 Mar 1;8(3):66. doi: 10.3390/v8030066. Viruses. 2016. PMID: 26938550 Free PMC article.

5

Two asian jumbo phages, ϕRSL2 and ϕRSF1, infect Ralstonia solanacearum and show common features of ϕKZ-related phages.

Bhunchoth A, Blanc-Mathieu R, Mihara T, Nishimura Y, Askora A, Phironrit N, Leksomboon C, Chatchawankanphanich O, Kawasaki T, Nakano M, Fujie M, Ogata H, Yamada T. Bhunchoth A, et al. Among authors: nishimura y. Virology. 2016 Jul;494:56-66. doi: 10.1016/j.virol.2016.03.028. Epub 2016 Apr 12. Virology. 2016. PMID: 27081857 Free article.

6

ViPTree: the viral proteomic tree server.

Nishimura Y, Yoshida T, Kuronishi M, Uehara H, Ogata H, Goto S. Nishimura Y, et al. Bioinformatics. 2017 Aug 1;33(15):2379-2380. doi: 10.1093/bioinformatics/btx157. Bioinformatics. 2017. PMID: 28379287 Free article.

7

Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan.

Yoshida T, Nishimura Y, Watai H, Haruki N, Morimoto D, Kaneko H, Honda T, Yamamoto K, Hingamp P, Sako Y, Goto S, Ogata H. Yoshida T, et al. Among authors: nishimura y. ISME J. 2018 May;12(5):1287-1295. doi: 10.1038/s41396-018-0052-x. Epub 2018 Jan 30. ISME J. 2018. PMID: 29382948 Free PMC article.

8

Correction: Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan.

Yoshida T, Nishimura Y, Watai H, Haruki N, Morimoto D, Kaneko H, Honda T, Yamamoto K, Hingamp P, Sako Y, Goto S, Ogata H. Yoshida T, et al. Among authors: nishimura y. ISME J. 2018 Dec;12(12):3046. doi: 10.1038/s41396-018-0247-1. ISME J. 2018. PMID: 30068936 Free PMC article.

9

Cooccurrence of Broad- and Narrow-Host-Range Viruses Infecting the Bloom-Forming Toxic Cyanobacterium Microcystis aeruginosa.

Morimoto D, Tominaga K, Nishimura Y, Yoshida N, Kimura S, Sako Y, Yoshida T. Morimoto D, et al. Among authors: nishimura y. Appl Environ Microbiol. 2019 Aug 29;85(18):e01170-19. doi: 10.1128/AEM.01170-19. Print 2019 Sep 15. Appl Environ Microbiol. 2019. PMID: 31324627 Free PMC article.

10

Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake.

Okazaki Y, Nishimura Y, Yoshida T, Ogata H, Nakano SI. Okazaki Y, et al. Among authors: nishimura y. Environ Microbiol. 2019 Dec;21(12):4740-4754. doi: 10.1111/1462-2920.14816. Epub 2019 Nov 6. Environ Microbiol. 2019. PMID: 31608575

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