Luthey-Schulten Z - Search Results

1

Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations.

Earnest TM, Watanabe R, Stone JE, Mahamid J, Baumeister W, Villa E, Luthey-Schulten Z. Earnest TM, et al. J Phys Chem B. 2017 Apr 20;121(15):3871-3881. doi: 10.1021/acs.jpcb.7b00672. Epub 2017 Mar 30. J Phys Chem B. 2017. PMID: 28291359 Free PMC article.

2

Cytochrome c(2) Exit Strategy: Dissociation Studies and Evolutionary Implications.

Pogorelov TV, Autenrieth F, Roberts E, Luthey-Schulten ZA. Pogorelov TV, et al. J Phys Chem B. 2007 Jan 25;111(3):618-34. doi: 10.1021/jp064973i. J Phys Chem B. 2007. PMID: 17228920

3

Noise contributions in an inducible genetic switch: a whole-cell simulation study.

Roberts E, Magis A, Ortiz JO, Baumeister W, Luthey-Schulten Z. Roberts E, et al. PLoS Comput Biol. 2011 Mar;7(3):e1002010. doi: 10.1371/journal.pcbi.1002010. Epub 2011 Mar 10. PLoS Comput Biol. 2011. PMID: 21423716 Free PMC article.

4

Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations.

Chen K, Eargle J, Lai J, Kim H, Abeysirigunawardena S, Mayerle M, Woodson S, Ha T, Luthey-Schulten Z. Chen K, et al. J Phys Chem B. 2012 Jun 14;116(23):6819-31. doi: 10.1021/jp212614b. Epub 2012 May 25. J Phys Chem B. 2012. PMID: 22458631 Free PMC article.

5

Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.

Roberts E, Stone JE, Luthey-Schulten Z. Roberts E, et al. J Comput Chem. 2013 Jan 30;34(3):245-55. doi: 10.1002/jcc.23130. Epub 2012 Sep 25. J Comput Chem. 2013. PMID: 23007888 Free PMC article.

6

DNA looping increases the range of bistability in a stochastic model of the lac genetic switch.

Earnest TM, Roberts E, Assaf M, Dahmen K, Luthey-Schulten Z. Earnest TM, et al. Phys Biol. 2013 Apr;10(2):026002. doi: 10.1088/1478-3975/10/2/026002. Epub 2013 Feb 13. Phys Biol. 2013. PMID: 23406725

7

Structural intermediates and folding events in the early assembly of the ribosomal small subunit.

Lai J, Chen K, Luthey-Schulten Z. Lai J, et al. J Phys Chem B. 2013 Oct 24;117(42):13335-45. doi: 10.1021/jp404106r. Epub 2013 Sep 30. J Phys Chem B. 2013. PMID: 23972210

8

Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations.

Hallock MJ, Stone JE, Roberts E, Fry C, Luthey-Schulten Z. Hallock MJ, et al. Parallel Comput. 2014 May 1;40(5-6):86-99. doi: 10.1016/j.parco.2014.03.009. Parallel Comput. 2014. PMID: 24882911 Free PMC article.

9

Native conformational dynamics of the spliceosomal U1A protein.

Guzman I, Ghaemi Z, Baranger A, Luthey-Schulten Z, Gruebele M. Guzman I, et al. J Phys Chem B. 2015 Mar 5;119(9):3651-61. doi: 10.1021/jp511760m. Epub 2015 Feb 24. J Phys Chem B. 2015. PMID: 25659967

10

Toward a Whole-Cell Model of Ribosome Biogenesis: Kinetic Modeling of SSU Assembly.

Earnest TM, Lai J, Chen K, Hallock MJ, Williamson JR, Luthey-Schulten Z. Earnest TM, et al. Biophys J. 2015 Sep 15;109(6):1117-35. doi: 10.1016/j.bpj.2015.07.030. Epub 2015 Aug 30. Biophys J. 2015. PMID: 26333594 Free PMC article.

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