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Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever.
Phan MD, Kidgell C, Nair S, Holt KE, Turner AK, Hinds J, Butcher P, Cooke FJ, Thomson NR, Titball R, Bhutta ZA, Hasan R, Dougan G, Wain J. Phan MD, et al. Among authors: thomson nr. Antimicrob Agents Chemother. 2009 Feb;53(2):716-27. doi: 10.1128/AAC.00645-08. Epub 2008 Nov 17. Antimicrob Agents Chemother. 2009. PMID: 19015365 Free PMC article.
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype.
Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, Gordon MA, Harris D, Clarke L, Whitehead S, Sangal V, Marsh K, Achtman M, Molyneux ME, Cormican M, Parkhill J, MacLennan CA, Heyderman RS, Dougan G. Kingsley RA, et al. Among authors: thomson nr. Genome Res. 2009 Dec;19(12):2279-87. doi: 10.1101/gr.091017.109. Epub 2009 Nov 9. Genome Res. 2009. PMID: 19901036 Free PMC article.
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.
Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, Parkhill J, Dougan G, Thomson NR. Holt KE, et al. Among authors: thomson nr. Nat Genet. 2012 Sep;44(9):1056-9. doi: 10.1038/ng.2369. Epub 2012 Aug 5. Nat Genet. 2012. PMID: 22863732 Free PMC article.
Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.
Sangal V, Holt KE, Yuan J, Brown DJ, Filliol-Toutain I, Weill FX, Kim DW, da Silveira WD, Pickard D, Thomson NR, Parkhill J, Yu J. Sangal V, et al. Among authors: thomson nr. J Clin Microbiol. 2013 Jan;51(1):303-5. doi: 10.1128/JCM.02238-12. Epub 2012 Oct 31. J Clin Microbiol. 2013. PMID: 23115259 Free PMC article.
Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar.
Kingsley RA, Kay S, Connor T, Barquist L, Sait L, Holt KE, Sivaraman K, Wileman T, Goulding D, Clare S, Hale C, Seshasayee A, Harris S, Thomson NR, Gardner P, Rabsch W, Wigley P, Humphrey T, Parkhill J, Dougan G. Kingsley RA, et al. Among authors: thomson nr. mBio. 2013 Aug 27;4(5):e00565-13. doi: 10.1128/mBio.00565-13. mBio. 2013. PMID: 23982073 Free PMC article.
Tracking the establishment of local endemic populations of an emergent enteric pathogen.
Holt KE, Thieu Nga TV, Thanh DP, Vinh H, Kim DW, Vu Tra MP, Campbell JI, Hoang NV, Vinh NT, Minh PV, Thuy CT, Nga TT, Thompson C, Dung TT, Nhu NT, Vinh PV, Tuyet PT, Phuc HL, Lien NT, Phu BD, Ai NT, Tien NM, Dong N, Parry CM, Hien TT, Farrar JJ, Parkhill J, Dougan G, Thomson NR, Baker S. Holt KE, et al. Among authors: thomson nr. Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17522-7. doi: 10.1073/pnas.1308632110. Epub 2013 Sep 30. Proc Natl Acad Sci U S A. 2013. PMID: 24082120 Free PMC article.
Genomic Investigations unmask Mycoplasma amphoriforme, a new respiratory pathogen.
Gillespie SH, Ling CL, Oravcova K, Pinheiro M, Wells L, Bryant JM, McHugh TD, Bébéar C, Webster D, Harris SR, Seth-Smith HM, Thomson NR. Gillespie SH, et al. Among authors: thomson nr. Clin Infect Dis. 2015 Feb 1;60(3):381-8. doi: 10.1093/cid/ciu820. Epub 2014 Oct 23. Clin Infect Dis. 2015. PMID: 25344534 Free PMC article.
345 results