Hankeln T - Search Results

1

AFS: identification and quantification of species composition by metagenomic sequencing.

Liu Y, Ripp F, Koeppel R, Schmidt H, Hellmann SL, Weber M, Krombholz CF, Schmidt B, Hankeln T. Liu Y, et al. Among authors: hankeln t. Bioinformatics. 2017 May 1;33(9):1396-1398. doi: 10.1093/bioinformatics/btw822. Bioinformatics. 2017. PMID: 28453677

2

All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing.

Ripp F, Krombholz CF, Liu Y, Weber M, Schäfer A, Schmidt B, Köppel R, Hankeln T. Ripp F, et al. Among authors: hankeln t. BMC Genomics. 2014 Jul 31;15(1):639. doi: 10.1186/1471-2164-15-639. BMC Genomics. 2014. PMID: 25081296 Free PMC article.

3

MetaCache: context-aware classification of metagenomic reads using minhashing.

Müller A, Hundt C, Hildebrandt A, Hankeln T, Schmidt B. Müller A, et al. Among authors: hankeln t. Bioinformatics. 2017 Dec 1;33(23):3740-3748. doi: 10.1093/bioinformatics/btx520. Bioinformatics. 2017. PMID: 28961782

4

A big data approach to metagenomics for all-food-sequencing.

Kobus R, Abuín JM, Müller A, Hellmann SL, Pichel JC, Pena TF, Hildebrandt A, Hankeln T, Schmidt B. Kobus R, et al. Among authors: hankeln t. BMC Bioinformatics. 2020 Mar 12;21(1):102. doi: 10.1186/s12859-020-3429-6. BMC Bioinformatics. 2020. PMID: 32164527 Free PMC article.

5

RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads.

Niebler S, Müller A, Hankeln T, Schmidt B. Niebler S, et al. Among authors: hankeln t. BMC Bioinformatics. 2020 Jul 1;21(1):274. doi: 10.1186/s12859-020-03593-4. BMC Bioinformatics. 2020. PMID: 32611394 Free PMC article.

6

Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data.

Liu Y, Hankeln T, Schmidt B. Liu Y, et al. Among authors: hankeln t. IEEE/ACM Trans Comput Biol Bioinform. 2016 May-Jun;13(3):592-8. doi: 10.1109/TCBB.2015.2430314. IEEE/ACM Trans Comput Biol Bioinform. 2016. PMID: 27295644

7

Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence.

Oppold AM, Schmidt H, Rose M, Hellmann SL, Dolze F, Ripp F, Weich B, Schmidt-Ott U, Schmidt E, Kofler R, Hankeln T, Pfenninger M. Oppold AM, et al. Among authors: hankeln t. Mol Ecol. 2017 Jun;26(12):3256-3275. doi: 10.1111/mec.14111. Epub 2017 Apr 12. Mol Ecol. 2017. PMID: 28316106

8

A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge Chironomus riparius (Diptera).

Schmidt H, Hellmann SL, Waldvogel AM, Feldmeyer B, Hankeln T, Pfenninger M. Schmidt H, et al. Among authors: hankeln t. G3 (Bethesda). 2020 Apr 9;10(4):1151-1157. doi: 10.1534/g3.119.400710. G3 (Bethesda). 2020. PMID: 32060047 Free PMC article.

9

Genomics and transcriptomics of epizoic Seisonidea (Rotifera, syn. Syndermata) reveal strain formation and gradual gene loss with growing ties to the host.

Mauer KM, Schmidt H, Dittrich M, Fröbius AC, Hellmann SL, Zischler H, Hankeln T, Herlyn H. Mauer KM, et al. Among authors: hankeln t. BMC Genomics. 2021 Aug 9;22(1):604. doi: 10.1186/s12864-021-07857-y. BMC Genomics. 2021. PMID: 34372786 Free PMC article.

10

Identification of antiparasitic drug targets using a multi-omics workflow in the acanthocephalan model.

Schmidt H, Mauer K, Glaser M, Dezfuli BS, Hellmann SL, Silva Gomes AL, Butter F, Wade RC, Hankeln T, Herlyn H. Schmidt H, et al. Among authors: hankeln t. BMC Genomics. 2022 Sep 30;23(1):677. doi: 10.1186/s12864-022-08882-1. BMC Genomics. 2022. PMID: 36180835 Free PMC article.

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