Adamiak RW - Search Results

1

A normal genetic variation modulates synaptic MMP-9 protein levels and the severity of schizophrenia symptoms.

Lepeta K, Purzycka KJ, Pachulska-Wieczorek K, Mitjans M, Begemann M, Vafadari B, Bijata K, Adamiak RW, Ehrenreich H, Dziembowska M, Kaczmarek L. Lepeta K, et al. Among authors: adamiak rw. EMBO Mol Med. 2017 Aug;9(8):1100-1116. doi: 10.15252/emmm.201707723. EMBO Mol Med. 2017. PMID: 28623238 Free PMC article.

2

New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5' end of the HIV-2 leader RNA.

Pachulska-Wieczorek K, Purzycka KJ, Adamiak RW. Pachulska-Wieczorek K, et al. Among authors: adamiak rw. Nucleic Acids Res. 2006 May 31;34(10):2984-97. doi: 10.1093/nar/gkl373. Print 2006. Nucleic Acids Res. 2006. PMID: 16738137 Free PMC article.

3

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA.

Purzycka KJ, Pachulska-Wieczorek K, Adamiak RW. Purzycka KJ, et al. Among authors: adamiak rw. Nucleic Acids Res. 2011 Sep 1;39(16):7234-48. doi: 10.1093/nar/gkr385. Epub 2011 May 26. Nucleic Acids Res. 2011. PMID: 21622659 Free PMC article.

4

RNAComposer and RNA 3D structure prediction for nanotechnology.

Biesiada M, Pachulska-Wieczorek K, Adamiak RW, Purzycka KJ. Biesiada M, et al. Among authors: adamiak rw. Methods. 2016 Jul 1;103:120-7. doi: 10.1016/j.ymeth.2016.03.010. Epub 2016 Mar 24. Methods. 2016. PMID: 27016145

5

The HIV-2 TAR RNA domain as a potential source of viral-encoded miRNA. A reconnaissance study.

Purzycka KJ, Adamiak RW. Purzycka KJ, et al. Among authors: adamiak rw. Nucleic Acids Symp Ser (Oxf). 2008;(52):511-2. doi: 10.1093/nass/nrn259. Nucleic Acids Symp Ser (Oxf). 2008. PMID: 18776478

6

Automated RNA 3D Structure Prediction with RNAComposer.

Biesiada M, Purzycka KJ, Szachniuk M, Blazewicz J, Adamiak RW. Biesiada M, et al. Among authors: adamiak rw. Methods Mol Biol. 2016;1490:199-215. doi: 10.1007/978-1-4939-6433-8_13. Methods Mol Biol. 2016. PMID: 27665601

7

The matrix domain contributes to the nucleic acid chaperone activity of HIV-2 Gag.

Pachulska-Wieczorek K, Błaszczyk L, Biesiada M, Adamiak RW, Purzycka KJ. Pachulska-Wieczorek K, et al. Among authors: adamiak rw. Retrovirology. 2016 Mar 17;13:18. doi: 10.1186/s12977-016-0245-1. Retrovirology. 2016. PMID: 26987314 Free PMC article.

8

Automated 3D structure composition for large RNAs.

Popenda M, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW. Popenda M, et al. Among authors: adamiak rw. Nucleic Acids Res. 2012 Aug;40(14):e112. doi: 10.1093/nar/gks339. Epub 2012 Apr 26. Nucleic Acids Res. 2012. PMID: 22539264 Free PMC article.

9

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models.

Gumna J, Antczak M, Adamiak RW, Bujnicki JM, Chen SJ, Ding F, Ghosh P, Li J, Mukherjee S, Nithin C, Pachulska-Wieczorek K, Ponce-Salvatierra A, Popenda M, Sarzynska J, Wirecki T, Zhang D, Zhang S, Zok T, Westhof E, Miao Z, Szachniuk M, Rybarczyk A. Gumna J, et al. Among authors: adamiak rw. Int J Mol Sci. 2022 Aug 25;23(17):9630. doi: 10.3390/ijms23179630. Int J Mol Sci. 2022. PMID: 36077037 Free PMC article.

10

Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.

Purzycka KJ, Popenda M, Szachniuk M, Antczak M, Lukasiak P, Blazewicz J, Adamiak RW. Purzycka KJ, et al. Among authors: adamiak rw. Methods Enzymol. 2015;553:3-34. doi: 10.1016/bs.mie.2014.10.050. Epub 2015 Feb 4. Methods Enzymol. 2015. PMID: 25726459

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