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The Image Data Resource: A Bioimage Data Integration and Publication Platform.
Williams E, Moore J, Li SW, Rustici G, Tarkowska A, Chessel A, Leo S, Antal B, Ferguson RK, Sarkans U, Brazma A, Salas REC, Swedlow JR. Williams E, et al. Among authors: swedlow jr. Nat Methods. 2017 Aug;14(8):775-781. doi: 10.1038/nmeth.4326. Epub 2017 Jun 19. Nat Methods. 2017. PMID: 28775673 Free PMC article.
Open tools for storage and management of quantitative image data.
Moore J, Allan C, Burel JM, Loranger B, MacDonald D, Monk J, Swedlow JR. Moore J, et al. Among authors: swedlow jr. Methods Cell Biol. 2008;85:555-70. doi: 10.1016/S0091-679X(08)85024-8. Methods Cell Biol. 2008. PMID: 18155479
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).
Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen JH, Daian F, Dauga D, Davidson DR, Gimenez G, Goo YA, Grimmond S, Henrich T, Herrmann BG, Johnson MH, Korb M, Mills JC, Oudes AJ, Parkinson HE, Pascal LE, Pollet N, Quackenbush J, Ramialison M, Ringwald M, Salgado D, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Warford A, Wilkinson DG, Zhou Y, Zon LI, Liu AY, True LD. Deutsch EW, et al. Among authors: swedlow j. Nat Biotechnol. 2008 Mar;26(3):305-12. doi: 10.1038/nbt1391. Nat Biotechnol. 2008. PMID: 18327244 Free PMC article.
Bioimage informatics for experimental biology.
Swedlow JR, Goldberg IG, Eliceiri KW; OME Consortium. Swedlow JR, et al. Annu Rev Biophys. 2009;38:327-46. doi: 10.1146/annurev.biophys.050708.133641. Annu Rev Biophys. 2009. PMID: 19416072 Free PMC article. Review.
Metadata matters: access to image data in the real world.
Linkert M, Rueden CT, Allan C, Burel JM, Moore W, Patterson A, Loranger B, Moore J, Neves C, Macdonald D, Tarkowska A, Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR. Linkert M, et al. Among authors: swedlow jr. J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104. J Cell Biol. 2010. PMID: 20513764 Free PMC article.
Channeling the data deluge.
Swedlow JR, Zanetti G, Best C. Swedlow JR, et al. Nat Methods. 2011 Jun;8(6):463-5. doi: 10.1038/nmeth.1616. Nat Methods. 2011. PMID: 21623351 No abstract available.
OMERO: flexible, model-driven data management for experimental biology.
Allan C, Burel JM, Moore J, Blackburn C, Linkert M, Loynton S, Macdonald D, Moore WJ, Neves C, Patterson A, Porter M, Tarkowska A, Loranger B, Avondo J, Lagerstedt I, Lianas L, Leo S, Hands K, Hay RT, Patwardhan A, Best C, Kleywegt GJ, Zanetti G, Swedlow JR. Allan C, et al. Among authors: swedlow jr. Nat Methods. 2012 Feb 28;9(3):245-53. doi: 10.1038/nmeth.1896. Nat Methods. 2012. PMID: 22373911 Free PMC article.
Biological imaging software tools.
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE. Eliceiri KW, et al. Among authors: swedlow jr. Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Nat Methods. 2012. PMID: 22743775 Free PMC article.
128 results