Crandall K - Search Results

1

Overexpressed somatic alleles are enriched in functional elements in Breast Cancer.

Restrepo P, Movassagh M, Alomran N, Miller C, Li M, Trenkov C, Manchev Y, Bahl S, Warnken S, Spurr L, Apanasovich T, Crandall K, Edwards N, Horvath A. Restrepo P, et al. Among authors: crandall k. Sci Rep. 2017 Aug 15;7(1):8287. doi: 10.1038/s41598-017-08416-w. Sci Rep. 2017. PMID: 28811643 Free PMC article.

2

Microbial diversity within the airway microbiome in chronic pediatric lung diseases.

Hahn A, Warnken S, Pérez-Losada M, Freishtat RJ, Crandall KA. Hahn A, et al. Infect Genet Evol. 2018 Sep;63:316-325. doi: 10.1016/j.meegid.2017.12.006. Epub 2017 Dec 7. Infect Genet Evol. 2018. PMID: 29225146 Free PMC article. Review.

3

Systematic pan-cancer analysis of somatic allele frequency.

Spurr L, Li M, Alomran N, Zhang Q, Restrepo P, Movassagh M, Trenkov C, Tunnessen N, Apanasovich T, Crandall KA, Edwards N, Horvath A. Spurr L, et al. Sci Rep. 2018 May 16;8(1):7735. doi: 10.1038/s41598-018-25462-0. Sci Rep. 2018. PMID: 29769535 Free PMC article.

4

Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis.

Hahn A, Fanous H, Jensen C, Chaney H, Sami I, Perez GF, Koumbourlis AC, Louie S, Bost JE, van den Anker JN, Freishtat RJ, Zemanick ET, Crandall KA. Hahn A, et al. Sci Rep. 2019 Feb 22;9(1):2534. doi: 10.1038/s41598-019-38984-y. Sci Rep. 2019. PMID: 30796252 Free PMC article.

5

Machine learning approaches to predict lupus disease activity from gene expression data.

Kegerreis B, Catalina MD, Bachali P, Geraci NS, Labonte AC, Zeng C, Stearrett N, Crandall KA, Lipsky PE, Grammer AC. Kegerreis B, et al. Sci Rep. 2019 Jul 3;9(1):9617. doi: 10.1038/s41598-019-45989-0. Sci Rep. 2019. PMID: 31270349 Free PMC article.

6

ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data.

Spurr LF, Alomran N, Bousounis P, Reece-Stremtan D, Prashant NM, Liu H, Słowiński P, Li M, Zhang Q, Sein J, Asher G, Crandall KA, Tsaneva-Atanasova K, Horvath A. Spurr LF, et al. Among authors: crandall ka. Bioinformatics. 2020 Mar 1;36(5):1351-1359. doi: 10.1093/bioinformatics/btz750. Bioinformatics. 2020. PMID: 31589315 Free PMC article.

7

A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing.

Gibson KM, Jair K, Castel AD, Bendall ML, Wilbourn B, Jordan JA, Crandall KA, Pérez-Losada M; DC Cohort Executive Committee. Gibson KM, et al. Among authors: crandall ka. Sci Rep. 2020 Feb 6;10(1):1989. doi: 10.1038/s41598-020-58410-y. Sci Rep. 2020. PMID: 32029767 Free PMC article.

8

Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers.

Steiner MC, Marston JL, Iñiguez LP, Bendall ML, Chiappinelli KB, Nixon DF, Crandall KA. Steiner MC, et al. Cancer Res. 2021 Jul 1;81(13):3449-3460. doi: 10.1158/0008-5472.CAN-20-3975. Epub 2021 May 3. Cancer Res. 2021. PMID: 33941616 Free PMC article.

9

Epidemiological associations with genomic variation in SARS-CoV-2.

Rahnavard A, Dawson T, Clement R, Stearrett N, Pérez-Losada M, Crandall KA. Rahnavard A, et al. Sci Rep. 2021 Nov 26;11(1):23023. doi: 10.1038/s41598-021-02548-w. Sci Rep. 2021. PMID: 34837008 Free PMC article.

10

Metabolite, protein, and tissue dysfunction associated with COVID-19 disease severity.

Rahnavard A, Mann B, Giri A, Chatterjee R, Crandall KA. Rahnavard A, et al. Sci Rep. 2022 Jul 16;12(1):12204. doi: 10.1038/s41598-022-16396-9. Sci Rep. 2022. PMID: 35842456 Free PMC article.

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