Aerts S - Search Results

1

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks.

Kalender Atak Z, Imrichova H, Svetlichnyy D, Hulselmans G, Christiaens V, Reumers J, Ceulemans H, Aerts S. Kalender Atak Z, et al. Among authors: aerts s. Genome Med. 2017 Aug 30;9(1):80. doi: 10.1186/s13073-017-0464-7. Genome Med. 2017. PMID: 28854983 Free PMC article.

2

Toucan: deciphering the cis-regulatory logic of coregulated genes.

Aerts S, Thijs G, Coessens B, Staes M, Moreau Y, De Moor B. Aerts S, et al. Nucleic Acids Res. 2003 Mar 15;31(6):1753-64. doi: 10.1093/nar/gkg268. Nucleic Acids Res. 2003. PMID: 12626717 Free PMC article.

3

Computational detection of cis -regulatory modules.

Aerts S, Van Loo P, Thijs G, Moreau Y, De Moor B. Aerts S, et al. Bioinformatics. 2003 Oct;19 Suppl 2:ii5-14. doi: 10.1093/bioinformatics/btg1052. Bioinformatics. 2003. PMID: 14534164

4

Text-mining assisted regulatory annotation.

Aerts S, Haeussler M, van Vooren S, Griffith OL, Hulpiau P, Jones SJ, Montgomery SB, Bergman CM; Open Regulatory Annotation Consortium. Aerts S, et al. Genome Biol. 2008;9(2):R31. doi: 10.1186/gb-2008-9-2-r31. Epub 2008 Feb 13. Genome Biol. 2008. PMID: 18271954 Free PMC article.

5

ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?

Van Loo P, Aerts S, Thienpont B, De Moor B, Moreau Y, Marynen P. Van Loo P, et al. Among authors: aerts s. Genome Biol. 2008 Apr 7;9(4):R66. doi: 10.1186/gb-2008-9-4-r66. Genome Biol. 2008. PMID: 18394174 Free PMC article.

6

Sequencing the regulatory genome.

Aerts S, Butland S. Aerts S, et al. Genome Biol. 2008;9(6):313. doi: 10.1186/gb-2008-9-6-313. Epub 2008 Jun 19. Genome Biol. 2008. PMID: 18598374 Free PMC article.

7

Robust target gene discovery through transcriptome perturbations and genome-wide enhancer predictions in Drosophila uncovers a regulatory basis for sensory specification.

Aerts S, Quan XJ, Claeys A, Naval Sanchez M, Tate P, Yan J, Hassan BA. Aerts S, et al. PLoS Biol. 2010 Jul 27;8(7):e1000435. doi: 10.1371/journal.pbio.1000435. PLoS Biol. 2010. PMID: 20668662 Free PMC article.

8

Whole-genome prediction of cis-regulatory modules and target genes yields insight into gene regulatory networks underlying sensory differentiation.

Aerts S, Hassan B. Aerts S, et al. Fly (Austin). 2011 Jul-Sep;5(3):221-3. doi: 10.4161/fly.5.3.15542. Epub 2011 Jul 1. Fly (Austin). 2011. PMID: 21471735 Free article.

9

Mutation analysis of the tyrosine phosphatase PTPN2 in Hodgkin's lymphoma and T-cell non-Hodgkin's lymphoma.

Kleppe M, Tousseyn T, Geissinger E, Kalender Atak Z, Aerts S, Rosenwald A, Wlodarska I, Cools J. Kleppe M, et al. Among authors: aerts s. Haematologica. 2011 Nov;96(11):1723-7. doi: 10.3324/haematol.2011.041921. Epub 2011 Jul 26. Haematologica. 2011. PMID: 21791476 Free PMC article. Clinical Trial.

10

Computational strategies for the genome-wide identification of cis-regulatory elements and transcriptional targets.

Aerts S. Aerts S. Curr Top Dev Biol. 2012;98:121-45. doi: 10.1016/B978-0-12-386499-4.00005-7. Curr Top Dev Biol. 2012. PMID: 22305161 Review.

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