Hatzimanikatis V - Search Results

1

Single-molecule kinetic analysis of HP1-chromatin binding reveals a dynamic network of histone modification and DNA interactions.

Bryan LC, Weilandt DR, Bachmann AL, Kilic S, Lechner CC, Odermatt PD, Fantner GE, Georgeon S, Hantschel O, Hatzimanikatis V, Fierz B. Bryan LC, et al. Among authors: hatzimanikatis v. Nucleic Acids Res. 2017 Oct 13;45(18):10504-10517. doi: 10.1093/nar/gkx697. Nucleic Acids Res. 2017. PMID: 28985346 Free PMC article.

2

Particle-Based Simulation Reveals Macromolecular Crowding Effects on the Michaelis-Menten Mechanism.

Weilandt DR, Hatzimanikatis V. Weilandt DR, et al. Among authors: hatzimanikatis v. Biophys J. 2019 Jul 23;117(2):355-368. doi: 10.1016/j.bpj.2019.06.017. Epub 2019 Jun 25. Biophys J. 2019. PMID: 31311624 Free PMC article.

3

Optimal enzyme utilization suggests that concentrations and thermodynamics determine binding mechanisms and enzyme saturations.

Sahin A, Weilandt DR, Hatzimanikatis V. Sahin A, et al. Among authors: hatzimanikatis v. Nat Commun. 2023 May 5;14(1):2618. doi: 10.1038/s41467-023-38159-4. Nat Commun. 2023. PMID: 37147292 Free PMC article.

4

Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks.

Choudhury S, Moret M, Salvy P, Weilandt D, Hatzimanikatis V, Miskovic L. Choudhury S, et al. Among authors: hatzimanikatis v. Nat Mach Intell. 2022;4(8):710-719. doi: 10.1038/s42256-022-00519-y. Epub 2022 Aug 30. Nat Mach Intell. 2022. PMID: 37790987 Free PMC article.

5

Rational strain design with minimal phenotype perturbation.

Narayanan B, Weilandt D, Masid M, Miskovic L, Hatzimanikatis V. Narayanan B, et al. Among authors: hatzimanikatis v. Nat Commun. 2024 Jan 24;15(1):723. doi: 10.1038/s41467-024-44831-0. Nat Commun. 2024. PMID: 38267425 Free PMC article.

6

Dynamic Radiolabeling of S-Palmitoylated Proteins.

Abrami L, Denhardt-Eriksson RA, Hatzimanikatis V, van der Goot FG. Abrami L, et al. Among authors: hatzimanikatis v. Methods Mol Biol. 2019;2009:111-127. doi: 10.1007/978-1-4939-9532-5_9. Methods Mol Biol. 2019. PMID: 31152399

7

Exploration of trade-offs between steady-state and dynamic properties in signaling cycles.

Radivojevic A, Chachuat B, Bonvin D, Hatzimanikatis V. Radivojevic A, et al. Among authors: hatzimanikatis v. Phys Biol. 2012 Aug;9(4):045010. doi: 10.1088/1478-3975/9/4/045010. Epub 2012 Aug 7. Phys Biol. 2012. PMID: 22872041 Free article.

8

Model-Driven Understanding of Palmitoylation Dynamics: Regulated Acylation of the Endoplasmic Reticulum Chaperone Calnexin.

Dallavilla T, Abrami L, Sandoz PA, Savoglidis G, Hatzimanikatis V, van der Goot FG. Dallavilla T, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2016 Feb 22;12(2):e1004774. doi: 10.1371/journal.pcbi.1004774. eCollection 2016 Feb. PLoS Comput Biol. 2016. PMID: 26900856 Free PMC article.

9

Quantification of Cooperativity in Heterodimer-DNA Binding Improves the Accuracy of Binding Specificity Models.

Isakova A, Berset Y, Hatzimanikatis V, Deplancke B. Isakova A, et al. Among authors: hatzimanikatis v. J Biol Chem. 2016 May 6;291(19):10293-306. doi: 10.1074/jbc.M115.691154. Epub 2016 Feb 24. J Biol Chem. 2016. PMID: 26912662 Free PMC article.

10

Analysis of Translation Elongation Dynamics in the Context of an Escherichia coli Cell.

Vieira JP, Racle J, Hatzimanikatis V. Vieira JP, et al. Among authors: hatzimanikatis v. Biophys J. 2016 May 10;110(9):2120-31. doi: 10.1016/j.bpj.2016.04.004. Biophys J. 2016. PMID: 27166819 Free PMC article.

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