Freed KF - Search Results

1

Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water.

Riback JA, Bowman MA, Zmyslowski AM, Knoverek CR, Jumper JM, Hinshaw JR, Kaye EB, Freed KF, Clark PL, Sosnick TR. Riback JA, et al. Among authors: freed kf. Science. 2017 Oct 13;358(6360):238-241. doi: 10.1126/science.aan5774. Science. 2017. PMID: 29026044 Free PMC article.

2

Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering.

Virtanen JJ, Makowski L, Sosnick TR, Freed KF. Virtanen JJ, et al. Among authors: freed kf. Biophys J. 2011 Oct 19;101(8):2061-9. doi: 10.1016/j.bpj.2011.09.021. Biophys J. 2011. PMID: 22004761 Free PMC article.

3

Response to Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".

Riback JA, Bowman MA, Zmyslowski A, Knoverek CR, Jumper J, Kaye EB, Freed KF, Clark PL, Sosnick TR. Riback JA, et al. Among authors: freed kf. Science. 2018 Aug 31;361(6405):eaar7949. doi: 10.1126/science.aar7949. Science. 2018. PMID: 30166460

4

Modeling the hydration layer around proteins: HyPred.

Virtanen JJ, Makowski L, Sosnick TR, Freed KF. Virtanen JJ, et al. Among authors: freed kf. Biophys J. 2010 Sep 8;99(5):1611-9. doi: 10.1016/j.bpj.2010.06.027. Biophys J. 2010. PMID: 20816074 Free PMC article.

5

De novo prediction of protein folding pathways and structure using the principle of sequential stabilization.

Adhikari AN, Freed KF, Sosnick TR. Adhikari AN, et al. Among authors: freed kf. Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17442-7. doi: 10.1073/pnas.1209000109. Epub 2012 Oct 8. Proc Natl Acad Sci U S A. 2012. PMID: 23045636 Free PMC article.

6

Simplified protein models: predicting folding pathways and structure using amino acid sequences.

Adhikari AN, Freed KF, Sosnick TR. Adhikari AN, et al. Among authors: freed kf. Phys Rev Lett. 2013 Jul 12;111(2):028103. doi: 10.1103/PhysRevLett.111.028103. Epub 2013 Jul 11. Phys Rev Lett. 2013. PMID: 23889448 Free PMC article.

7

Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations.

Baxa MC, Haddadian EJ, Jumper JM, Freed KF, Sosnick TR. Baxa MC, et al. Among authors: freed kf. Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15396-401. doi: 10.1073/pnas.1407768111. Epub 2014 Oct 13. Proc Natl Acad Sci U S A. 2014. PMID: 25313044 Free PMC article.

8

A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.

Wang Z, Jumper JM, Wang S, Freed KF, Sosnick TR. Wang Z, et al. Among authors: freed kf. Biophys J. 2018 Nov 20;115(10):1872-1884. doi: 10.1016/j.bpj.2018.10.012. Epub 2018 Oct 23. Biophys J. 2018. PMID: 30413241 Free PMC article.

9

Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours.

Jumper JM, Faruk NF, Freed KF, Sosnick TR. Jumper JM, et al. Among authors: freed kf. PLoS Comput Biol. 2018 Dec 27;14(12):e1006578. doi: 10.1371/journal.pcbi.1006578. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30589834 Free PMC article.

10

Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.

Jumper JM, Faruk NF, Freed KF, Sosnick TR. Jumper JM, et al. Among authors: freed kf. PLoS Comput Biol. 2018 Dec 27;14(12):e1006342. doi: 10.1371/journal.pcbi.1006342. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30589846 Free PMC article.

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