Jumper JM - Search Results

1

Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water.

Riback JA, Bowman MA, Zmyslowski AM, Knoverek CR, Jumper JM, Hinshaw JR, Kaye EB, Freed KF, Clark PL, Sosnick TR. Riback JA, et al. Among authors: jumper jm. Science. 2017 Oct 13;358(6360):238-241. doi: 10.1126/science.aan5774. Science. 2017. PMID: 29026044 Free PMC article.

2

Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations.

Baxa MC, Haddadian EJ, Jumper JM, Freed KF, Sosnick TR. Baxa MC, et al. Among authors: jumper jm. Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15396-401. doi: 10.1073/pnas.1407768111. Epub 2014 Oct 13. Proc Natl Acad Sci U S A. 2014. PMID: 25313044 Free PMC article.

3

Response to Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".

Riback JA, Bowman MA, Zmyslowski A, Knoverek CR, Jumper J, Kaye EB, Freed KF, Clark PL, Sosnick TR. Riback JA, et al. Science. 2018 Aug 31;361(6405):eaar7949. doi: 10.1126/science.aar7949. Science. 2018. PMID: 30166460

4

A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.

Wang Z, Jumper JM, Wang S, Freed KF, Sosnick TR. Wang Z, et al. Among authors: jumper jm. Biophys J. 2018 Nov 20;115(10):1872-1884. doi: 10.1016/j.bpj.2018.10.012. Epub 2018 Oct 23. Biophys J. 2018. PMID: 30413241 Free PMC article.

5

Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours.

Jumper JM, Faruk NF, Freed KF, Sosnick TR. Jumper JM, et al. PLoS Comput Biol. 2018 Dec 27;14(12):e1006578. doi: 10.1371/journal.pcbi.1006578. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30589834 Free PMC article.

6

Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.

Jumper JM, Faruk NF, Freed KF, Sosnick TR. Jumper JM, et al. PLoS Comput Biol. 2018 Dec 27;14(12):e1006342. doi: 10.1371/journal.pcbi.1006342. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30589846 Free PMC article.

7

On the Interpretation of Force-Induced Unfolding Studies of Membrane Proteins Using Fast Simulations.

Wang Z, Jumper JM, Freed KF, Sosnick TR. Wang Z, et al. Among authors: jumper jm. Biophys J. 2019 Oct 15;117(8):1429-1441. doi: 10.1016/j.bpj.2019.09.011. Epub 2019 Sep 17. Biophys J. 2019. PMID: 31587831 Free PMC article.

8

Atomic-level characterization of the structural dynamics of proteins.

Shaw DE, Maragakis P, Lindorff-Larsen K, Piana S, Dror RO, Eastwood MP, Bank JA, Jumper JM, Salmon JK, Shan Y, Wriggers W. Shaw DE, et al. Among authors: jumper jm. Science. 2010 Oct 15;330(6002):341-6. doi: 10.1126/science.1187409. Science. 2010. PMID: 20947758

9

Highly accurate protein structure prediction for the human proteome.

Tunyasuvunakool K, Adler J, Wu Z, Green T, Zielinski M, Žídek A, Bridgland A, Cowie A, Meyer C, Laydon A, Velankar S, Kleywegt GJ, Bateman A, Evans R, Pritzel A, Figurnov M, Ronneberger O, Bates R, Kohl SAA, Potapenko A, Ballard AJ, Romera-Paredes B, Nikolov S, Jain R, Clancy E, Reiman D, Petersen S, Senior AW, Kavukcuoglu K, Birney E, Kohli P, Jumper J, Hassabis D. Tunyasuvunakool K, et al. Nature. 2021 Aug;596(7873):590-596. doi: 10.1038/s41586-021-03828-1. Epub 2021 Jul 22. Nature. 2021. PMID: 34293799 Free PMC article.

10

Oncogenic mutations counteract intrinsic disorder in the EGFR kinase and promote receptor dimerization.

Shan Y, Eastwood MP, Zhang X, Kim ET, Arkhipov A, Dror RO, Jumper J, Kuriyan J, Shaw DE. Shan Y, et al. Cell. 2012 May 11;149(4):860-70. doi: 10.1016/j.cell.2012.02.063. Cell. 2012. PMID: 22579287 Free article.

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