Kim SA - Search Results

1

A new haplotype block detection method for dense genome sequencing data based on interval graph modeling of clusters of highly correlated SNPs.

Kim SA, Cho CS, Kim SR, Bull SB, Yoo YJ. Kim SA, et al. Among authors: kim sr. Bioinformatics. 2018 Feb 1;34(3):388-397. doi: 10.1093/bioinformatics/btx609. Bioinformatics. 2018. PMID: 29028986 Free PMC article.

2

BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data.

Chae H, Rhee S, Nephew KP, Kim S. Chae H, et al. Bioinformatics. 2015 Jan 15;31(2):265-7. doi: 10.1093/bioinformatics/btu614. Epub 2014 Sep 29. Bioinformatics. 2015. PMID: 25270639 Free article.

3

Clique-Based Clustering of Correlated SNPs in a Gene Can Improve Performance of Gene-Based Multi-Bin Linear Combination Test.

Yoo YJ, Kim SA, Bull SB. Yoo YJ, et al. Among authors: kim sa. Biomed Res Int. 2015;2015:852341. doi: 10.1155/2015/852341. Epub 2015 Aug 4. Biomed Res Int. 2015. PMID: 26346579 Free PMC article.

4

Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways.

Jo K, Jung I, Moon JH, Kim S. Jo K, et al. Bioinformatics. 2016 Jun 15;32(12):i128-i136. doi: 10.1093/bioinformatics/btw275. Bioinformatics. 2016. PMID: 27307609 Free PMC article.

5

TimesVector: a vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes.

Jung I, Jo K, Kang H, Ahn H, Yu Y, Kim S. Jung I, et al. Bioinformatics. 2017 Dec 1;33(23):3827-3835. doi: 10.1093/bioinformatics/btw780. Bioinformatics. 2017. PMID: 28096084

6

Effects of Single Nucleotide Polymorphism Marker Density on Haplotype Block Partition.

Kim SA, Yoo YJ. Kim SA, et al. Genomics Inform. 2016 Dec;14(4):196-204. doi: 10.5808/GI.2016.14.4.196. Epub 2016 Dec 30. Genomics Inform. 2016. PMID: 28154511 Free PMC article.

7

DeepFam: deep learning based alignment-free method for protein family modeling and prediction.

Seo S, Oh M, Park Y, Kim S. Seo S, et al. Bioinformatics. 2018 Jul 1;34(13):i254-i262. doi: 10.1093/bioinformatics/bty275. Bioinformatics. 2018. PMID: 29949966 Free PMC article.

8

gpart: human genome partitioning and visualization of high-density SNP data by identifying haplotype blocks.

Kim SA, Brossard M, Roshandel D, Paterson AD, Bull SB, Yoo YJ. Kim SA, et al. Bioinformatics. 2019 Nov 1;35(21):4419-4421. doi: 10.1093/bioinformatics/btz308. Bioinformatics. 2019. PMID: 31070701 Free PMC article.

9

mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering.

Kang H, Ahn H, Jo K, Oh M, Kim S. Kang H, et al. Bioinformatics. 2021 Jul 12;37(11):1544-1553. doi: 10.1093/bioinformatics/btz306. Bioinformatics. 2021. PMID: 31070735

10

CaPSSA: visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data.

Jang Y, Seo J, Jang I, Lee B, Kim S, Lee S. Jang Y, et al. Bioinformatics. 2019 Dec 15;35(24):5341-5343. doi: 10.1093/bioinformatics/btz516. Bioinformatics. 2019. PMID: 31228188

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