Webb GI - Search Results

1

PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy.

Song J, Li F, Leier A, Marquez-Lago TT, Akutsu T, Haffari G, Chou KC, Webb GI, Pike RN, Hancock J. Song J, et al. Among authors: webb gi. Bioinformatics. 2018 Feb 15;34(4):684-687. doi: 10.1093/bioinformatics/btx670. Bioinformatics. 2018. PMID: 29069280 Free PMC article.

2

Prodepth: predict residue depth by support vector regression approach from protein sequences only.

Song J, Tan H, Mahmood K, Law RH, Buckle AM, Webb GI, Akutsu T, Whisstock JC. Song J, et al. Among authors: webb gi. PLoS One. 2009 Sep 17;4(9):e7072. doi: 10.1371/journal.pone.0007072. PLoS One. 2009. PMID: 19759917 Free PMC article.

3

Cascleave: towards more accurate prediction of caspase substrate cleavage sites.

Song J, Tan H, Shen H, Mahmood K, Boyd SE, Webb GI, Akutsu T, Whisstock JC. Song J, et al. Among authors: webb gi. Bioinformatics. 2010 Mar 15;26(6):752-60. doi: 10.1093/bioinformatics/btq043. Epub 2010 Feb 3. Bioinformatics. 2010. PMID: 20130033

4

EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.

Mahmood K, Konagurthu AS, Song J, Buckle AM, Webb GI, Whisstock JC. Mahmood K, et al. Among authors: webb gi. Bioinformatics. 2010 Sep 1;26(17):2076-84. doi: 10.1093/bioinformatics/btq339. Epub 2010 Jun 27. Bioinformatics. 2010. PMID: 20581400

5

Bioinformatic approaches for predicting substrates of proteases.

Song J, Tan H, Boyd SE, Shen H, Mahmood K, Webb GI, Akutsu T, Whisstock JC, Pike RN. Song J, et al. Among authors: webb gi. J Bioinform Comput Biol. 2011 Feb;9(1):149-78. doi: 10.1142/s0219720011005288. J Bioinform Comput Biol. 2011. PMID: 21328711 Review.

6

Discovery of amino acid motifs for thrombin cleavage and validation using a model substrate.

Ng NM, Pierce JD, Webb GI, Ratnikov BI, Wijeyewickrema LC, Duncan RC, Robertson AL, Bottomley SP, Boyd SE, Pike RN. Ng NM, et al. Among authors: webb gi. Biochemistry. 2011 Dec 6;50(48):10499-507. doi: 10.1021/bi201333g. Epub 2011 Nov 11. Biochemistry. 2011. PMID: 22050556

7

Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs.

Mahmood K, Webb GI, Song J, Whisstock JC, Konagurthu AS. Mahmood K, et al. Among authors: webb gi. Nucleic Acids Res. 2012 Mar;40(6):e44. doi: 10.1093/nar/gkr1261. Epub 2011 Dec 30. Nucleic Acids Res. 2012. PMID: 22210858 Free PMC article.

8

TANGLE: two-level support vector regression approach for protein backbone torsion angle prediction from primary sequences.

Song J, Tan H, Wang M, Webb GI, Akutsu T. Song J, et al. Among authors: webb gi. PLoS One. 2012;7(2):e30361. doi: 10.1371/journal.pone.0030361. Epub 2012 Feb 2. PLoS One. 2012. PMID: 22319565 Free PMC article.

9

PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites.

Song J, Tan H, Perry AJ, Akutsu T, Webb GI, Whisstock JC, Pike RN. Song J, et al. Among authors: webb gi. PLoS One. 2012;7(11):e50300. doi: 10.1371/journal.pone.0050300. Epub 2012 Nov 29. PLoS One. 2012. PMID: 23209700 Free PMC article.

10

Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features.

Li Y, Wang M, Wang H, Tan H, Zhang Z, Webb GI, Song J. Li Y, et al. Among authors: webb gi. Sci Rep. 2014 Jul 21;4:5765. doi: 10.1038/srep05765. Sci Rep. 2014. PMID: 25042424 Free PMC article.

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