Patro R - Search Results

1

Quark enables semi-reference-based compression of RNA-seq data.

Sarkar H, Patro R. Sarkar H, et al. Among authors: patro r. Bioinformatics. 2017 Nov 1;33(21):3380-3386. doi: 10.1093/bioinformatics/btx428. Bioinformatics. 2017. PMID: 29077806

2

Global network alignment using multiscale spectral signatures.

Patro R, Kingsford C. Patro R, et al. Bioinformatics. 2012 Dec 1;28(23):3105-14. doi: 10.1093/bioinformatics/bts592. Epub 2012 Oct 9. Bioinformatics. 2012. PMID: 23047556 Free PMC article.

3

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.

Patro R, Mount SM, Kingsford C. Patro R, et al. Nat Biotechnol. 2014 May;32(5):462-4. doi: 10.1038/nbt.2862. Epub 2014 Apr 20. Nat Biotechnol. 2014. PMID: 24752080 Free PMC article.

4

Reference-based compression of short-read sequences using path encoding.

Kingsford C, Patro R. Kingsford C, et al. Among authors: patro r. Bioinformatics. 2015 Jun 15;31(12):1920-8. doi: 10.1093/bioinformatics/btv071. Epub 2015 Feb 2. Bioinformatics. 2015. PMID: 25649622 Free PMC article.

5

Data-dependent bucketing improves reference-free compression of sequencing reads.

Patro R, Kingsford C. Patro R, et al. Bioinformatics. 2015 Sep 1;31(17):2770-7. doi: 10.1093/bioinformatics/btv248. Epub 2015 Apr 24. Bioinformatics. 2015. PMID: 25910696 Free PMC article.

6

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

Zhang R, Calixto CP, Tzioutziou NA, James AB, Simpson CG, Guo W, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JW. Zhang R, et al. Among authors: patro r. New Phytol. 2015 Oct;208(1):96-101. doi: 10.1111/nph.13545. Epub 2015 Jun 25. New Phytol. 2015. PMID: 26111100 Free PMC article.

7

TransRate: reference-free quality assessment of de novo transcriptome assemblies.

Smith-Unna R, Boursnell C, Patro R, Hibberd JM, Kelly S. Smith-Unna R, et al. Among authors: patro r. Genome Res. 2016 Aug;26(8):1134-44. doi: 10.1101/gr.196469.115. Epub 2016 Jun 1. Genome Res. 2016. PMID: 27252236 Free PMC article.

8

RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.

Srivastava A, Sarkar H, Gupta N, Patro R. Srivastava A, et al. Among authors: patro r. Bioinformatics. 2016 Jun 15;32(12):i192-i200. doi: 10.1093/bioinformatics/btw277. Bioinformatics. 2016. PMID: 27307617 Free PMC article.

9

deBGR: an efficient and near-exact representation of the weighted de Bruijn graph.

Pandey P, Bender MA, Johnson R, Patro R. Pandey P, et al. Among authors: patro r. Bioinformatics. 2017 Jul 15;33(14):i133-i141. doi: 10.1093/bioinformatics/btx261. Bioinformatics. 2017. PMID: 28881995 Free PMC article.

10

Improved data-driven likelihood factorizations for transcript abundance estimation.

Zakeri M, Srivastava A, Almodaresi F, Patro R. Zakeri M, et al. Among authors: patro r. Bioinformatics. 2017 Jul 15;33(14):i142-i151. doi: 10.1093/bioinformatics/btx262. Bioinformatics. 2017. PMID: 28881996 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

75 results

Search Page

Filters