Shu N - Search Results

1

Topology of membrane proteins-predictions, limitations and variations.

Tsirigos KD, Govindarajan S, Bassot C, Västermark Å, Lamb J, Shu N, Elofsson A. Tsirigos KD, et al. Among authors: shu n. Curr Opin Struct Biol. 2018 Jun;50:9-17. doi: 10.1016/j.sbi.2017.10.003. Epub 2017 Nov 5. Curr Opin Struct Biol. 2018. PMID: 29100082 Review.

2

Large tilts in transmembrane helices can be induced during tertiary structure formation.

Virkki M, Boekel C, Illergård K, Peters C, Shu N, Tsirigos KD, Elofsson A, von Heijne G, Nilsson I. Virkki M, et al. Among authors: shu n. J Mol Biol. 2014 Jun 26;426(13):2529-38. doi: 10.1016/j.jmb.2014.04.020. Epub 2014 Apr 30. J Mol Biol. 2014. PMID: 24793448

3

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides.

Tsirigos KD, Peters C, Shu N, Käll L, Elofsson A. Tsirigos KD, et al. Among authors: shu n. Nucleic Acids Res. 2015 Jul 1;43(W1):W401-7. doi: 10.1093/nar/gkv485. Epub 2015 May 12. Nucleic Acids Res. 2015. PMID: 25969446 Free PMC article.

4

Improved topology prediction using the terminal hydrophobic helices rule.

Peters C, Tsirigos KD, Shu N, Elofsson A. Peters C, et al. Among authors: shu n. Bioinformatics. 2016 Apr 15;32(8):1158-62. doi: 10.1093/bioinformatics/btv709. Epub 2015 Dec 7. Bioinformatics. 2016. PMID: 26644416

5

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins.

Hayat S, Peters C, Shu N, Tsirigos KD, Elofsson A. Hayat S, et al. Among authors: shu n. Bioinformatics. 2016 May 15;32(10):1571-3. doi: 10.1093/bioinformatics/btw025. Epub 2016 Jan 21. Bioinformatics. 2016. PMID: 26794316

6

The evolutionary history of topological variations in the CPA/AT transporters.

Sudha G, Bassot C, Lamb J, Shu N, Huang Y, Elofsson A. Sudha G, et al. Among authors: shu n. PLoS Comput Biol. 2021 Aug 17;17(8):e1009278. doi: 10.1371/journal.pcbi.1009278. eCollection 2021 Aug. PLoS Comput Biol. 2021. PMID: 34403419 Free PMC article.

7

SubCons: a new ensemble method for improved human subcellular localization predictions.

Salvatore M, Warholm P, Shu N, Basile W, Elofsson A. Salvatore M, et al. Among authors: shu n. Bioinformatics. 2017 Aug 15;33(16):2464-2470. doi: 10.1093/bioinformatics/btx219. Bioinformatics. 2017. PMID: 28407043

8

The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction.

Salvatore M, Shu N, Elofsson A. Salvatore M, et al. Among authors: shu n. Protein Sci. 2018 Jan;27(1):195-201. doi: 10.1002/pro.3297. Epub 2017 Oct 24. Protein Sci. 2018. PMID: 28901589 Free PMC article.

9

KalignP: improved multiple sequence alignments using position specific gap penalties in Kalign2.

Shu N, Elofsson A. Shu N, et al. Bioinformatics. 2011 Jun 15;27(12):1702-3. doi: 10.1093/bioinformatics/btr235. Epub 2011 Apr 19. Bioinformatics. 2011. PMID: 21505030 Free PMC article.

10

Improved protein model quality assessments by changing the target function.

Uziela K, Menéndez Hurtado D, Shu N, Wallner B, Elofsson A. Uziela K, et al. Among authors: shu n. Proteins. 2018 Jun;86(6):654-663. doi: 10.1002/prot.25492. Epub 2018 Apr 15. Proteins. 2018. PMID: 29524250

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