Bussotti G - Search Results

1

Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani.

Prieto Barja P, Pescher P, Bussotti G, Dumetz F, Imamura H, Kedra D, Domagalska M, Chaumeau V, Himmelbauer H, Pages M, Sterkers Y, Dujardin JC, Notredame C, Späth GF. Prieto Barja P, et al. Among authors: bussotti g. Nat Ecol Evol. 2017 Dec;1(12):1961-1969. doi: 10.1038/s41559-017-0361-x. Epub 2017 Nov 6. Nat Ecol Evol. 2017. PMID: 29109466 Free article.

2

A novel, noncanonical mechanism of cytoplasmic polyadenylation operates in Drosophila embryogenesis.

Coll O, Villalba A, Bussotti G, Notredame C, Gebauer F. Coll O, et al. Among authors: bussotti g. Genes Dev. 2010 Jan 15;24(2):129-34. doi: 10.1101/gad.568610. Genes Dev. 2010. PMID: 20080951 Free PMC article.

3

BlastR--fast and accurate database searches for non-coding RNAs.

Bussotti G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C. Bussotti G, et al. Nucleic Acids Res. 2011 Sep 1;39(16):6886-95. doi: 10.1093/nar/gkr335. Epub 2011 May 30. Nucleic Acids Res. 2011. PMID: 21624887 Free PMC article.

4

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Kemena C, Notredame C. Taly JF, et al. Among authors: bussotti g. Nat Protoc. 2011 Nov;6(11):1669-82. doi: 10.1038/nprot.2011.393. Nat Protoc. 2011. PMID: 21979275

5

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq.

Esteve-Codina A, Kofler R, Palmieri N, Bussotti G, Notredame C, Pérez-Enciso M. Esteve-Codina A, et al. Among authors: bussotti g. BMC Genomics. 2011 Nov 8;12:552. doi: 10.1186/1471-2164-12-552. BMC Genomics. 2011. PMID: 22067327 Free PMC article.

6

Use of ChIP-Seq data for the design of a multiple promoter-alignment method.

Erb I, González-Vallinas JR, Bussotti G, Blanco E, Eyras E, Notredame C. Erb I, et al. Among authors: bussotti g. Nucleic Acids Res. 2012 Apr;40(7):e52. doi: 10.1093/nar/gkr1292. Epub 2012 Jan 9. Nucleic Acids Res. 2012. PMID: 22230796 Free PMC article.

7

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R. Derrien T, et al. Among authors: bussotti g. Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111. Genome Res. 2012. PMID: 22955988 Free PMC article.

8

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.

Kemena C, Bussotti G, Capriotti E, Marti-Renom MA, Notredame C. Kemena C, et al. Among authors: bussotti g. Bioinformatics. 2013 May 1;29(9):1112-9. doi: 10.1093/bioinformatics/btt096. Epub 2013 Feb 28. Bioinformatics. 2013. PMID: 23449094

9

Detecting and comparing non-coding RNAs in the high-throughput era.

Bussotti G, Notredame C, Enright AJ. Bussotti G, et al. Int J Mol Sci. 2013 Jul 24;14(8):15423-58. doi: 10.3390/ijms140815423. Int J Mol Sci. 2013. PMID: 23887659 Free PMC article. Review.

10

T-Coffee: Tree-based consistency objective function for alignment evaluation.

Magis C, Taly JF, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Notredame C. Magis C, et al. Among authors: bussotti g. Methods Mol Biol. 2014;1079:117-29. doi: 10.1007/978-1-62703-646-7_7. Methods Mol Biol. 2014. PMID: 24170398

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