Neuvial P - Search Results

1

New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels.

Sadacca B, Hamy AS, Laurent C, Gestraud P, Bonsang-Kitzis H, Pinheiro A, Abecassis J, Neuvial P, Reyal F. Sadacca B, et al. Among authors: neuvial p. Sci Rep. 2017 Nov 9;7(1):15126. doi: 10.1038/s41598-017-14770-6. Sci Rep. 2017. PMID: 29123141 Free PMC article.

2

Author Correction: New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels.

Sadacca B, Hamy AS, Laurent C, Gestraud P, Bonsang-Kitzis H, Pinheiro A, Abecassis J, Neuvial P, Reyal F. Sadacca B, et al. Among authors: neuvial p. Sci Rep. 2018 Dec 13;8(1):17945. doi: 10.1038/s41598-018-36812-3. Sci Rep. 2018. PMID: 30546106 Free PMC article.

3

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.

Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium; Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J. Menden MP, et al. Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2. Nat Commun. 2019. PMID: 31209238 Free PMC article.

4

tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation.

Chambaz A, Neuvial P. Chambaz A, et al. Among authors: neuvial p. Bioinformatics. 2015 Sep 15;31(18):3054-6. doi: 10.1093/bioinformatics/btv320. Epub 2015 May 21. Bioinformatics. 2015. PMID: 26002884

5

Powerful and interpretable control of false discoveries in two-group differential expression studies.

Enjalbert-Courrech N, Neuvial P. Enjalbert-Courrech N, et al. Among authors: neuvial p. Bioinformatics. 2022 Nov 30;38(23):5214-5221. doi: 10.1093/bioinformatics/btac693. Bioinformatics. 2022. PMID: 36264124

6

Identification of deregulation mechanisms specific to cancer subtypes.

Champion M, Chiquet J, Neuvial P, Elati M, Radvanyi F, Birmelé E. Champion M, et al. Among authors: neuvial p. J Bioinform Comput Biol. 2021 Feb;19(1):2140003. doi: 10.1142/S0219720021400035. J Bioinform Comput Biol. 2021. PMID: 33653235

7

Subtype and pathway specific responses to anticancer compounds in breast cancer.

Heiser LM, Sadanandam A, Kuo WL, Benz SC, Goldstein TC, Ng S, Gibb WJ, Wang NJ, Ziyad S, Tong F, Bayani N, Hu Z, Billig JI, Dueregger A, Lewis S, Jakkula L, Korkola JE, Durinck S, Pepin F, Guan Y, Purdom E, Neuvial P, Bengtsson H, Wood KW, Smith PG, Vassilev LT, Hennessy BT, Greshock J, Bachman KE, Hardwicke MA, Park JW, Marton LJ, Wolf DM, Collisson EA, Neve RM, Mills GB, Speed TP, Feiler HS, Wooster RF, Haussler D, Stuart JM, Gray JW, Spellman PT. Heiser LM, et al. Among authors: neuvial p. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2724-9. doi: 10.1073/pnas.1018854108. Epub 2011 Oct 14. Proc Natl Acad Sci U S A. 2012. PMID: 22003129 Free PMC article.

8

Stability-based comparison of class discovery methods for DNA copy number profiles.

Brito I, Hupé P, Neuvial P, Barillot E. Brito I, et al. Among authors: neuvial p. PLoS One. 2013 Dec 5;8(12):e81458. doi: 10.1371/journal.pone.0081458. eCollection 2013. PLoS One. 2013. PMID: 24339933 Free PMC article.

9

LICORN: learning cooperative regulation networks from gene expression data.

Elati M, Neuvial P, Bolotin-Fukuhara M, Barillot E, Radvanyi F, Rouveirol C. Elati M, et al. Among authors: neuvial p. Bioinformatics. 2007 Sep 15;23(18):2407-14. doi: 10.1093/bioinformatics/btm352. Epub 2007 Aug 24. Bioinformatics. 2007. PMID: 17720703

10

Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics.

Ambroise C, Dehman A, Neuvial P, Rigaill G, Vialaneix N. Ambroise C, et al. Among authors: neuvial p. Algorithms Mol Biol. 2019 Nov 15;14:22. doi: 10.1186/s13015-019-0157-4. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 31807137 Free PMC article.

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