Laczny CC - Search Results

1

Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates.

Laczny CC, Galata V, Plum A, Posch AE, Keller A. Laczny CC, et al. Brief Bioinform. 2019 May 21;20(3):857-865. doi: 10.1093/bib/bbx162. Brief Bioinform. 2019. PMID: 29220507

2

miRTrail--a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases.

Laczny C, Leidinger P, Haas J, Ludwig N, Backes C, Gerasch A, Kaufmann M, Vogel B, Katus HA, Meder B, Stähler C, Meese E, Lenhof HP, Keller A. Laczny C, et al. BMC Bioinformatics. 2012 Feb 22;13:36. doi: 10.1186/1471-2105-13-36. BMC Bioinformatics. 2012. PMID: 22356618 Free PMC article.

3

Comparing genome versus proteome-based identification of clinical bacterial isolates.

Galata V, Backes C, Laczny CC, Hemmrich-Stanisak G, Li H, Smoot L, Posch AE, Schmolke S, Bischoff M, von Müller L, Plum A, Franke A, Keller A. Galata V, et al. Among authors: laczny cc. Brief Bioinform. 2018 May 1;19(3):495-505. doi: 10.1093/bib/bbw122. Brief Bioinform. 2018. PMID: 28013236

4

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation.

Laczny CC, Kiefer C, Galata V, Fehlmann T, Backes C, Keller A. Laczny CC, et al. Nucleic Acids Res. 2017 Jul 3;45(W1):W171-W179. doi: 10.1093/nar/gkx348. Nucleic Acids Res. 2017. PMID: 28472498 Free PMC article.

5

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model.

Rupf S, Laczny CC, Galata V, Backes C, Keller A, Umanskaya N, Erol A, Tierling S, Lo Porto C, Walter J, Kirsch J, Hannig M, Hannig C. Rupf S, et al. Among authors: laczny cc. Sci Rep. 2018 Sep 18;8(1):14010. doi: 10.1038/s41598-018-32361-x. Sci Rep. 2018. PMID: 30228377 Free PMC article.

6

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates.

Galata V, Laczny CC, Backes C, Hemmrich-Stanisak G, Schmolke S, Franke A, Meese E, Herrmann M, von Müller L, Plum A, Müller R, Stähler C, Posch AE, Keller A. Galata V, et al. Among authors: laczny cc. Genomics Proteomics Bioinformatics. 2019 Apr;17(2):169-182. doi: 10.1016/j.gpb.2018.11.002. Epub 2019 May 14. Genomics Proteomics Bioinformatics. 2019. PMID: 31100356 Free PMC article.

7

PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data.

de Nies L, Lopes S, Busi SB, Galata V, Heintz-Buschart A, Laczny CC, May P, Wilmes P. de Nies L, et al. Among authors: laczny cc. Microbiome. 2021 Feb 17;9(1):49. doi: 10.1186/s40168-020-00993-9. Microbiome. 2021. PMID: 33597026 Free PMC article.

8

Functional meta-omics provide critical insights into long- and short-read assemblies.

Galata V, Busi SB, Kunath BJ, de Nies L, Calusinska M, Halder R, May P, Wilmes P, Laczny CC. Galata V, et al. Among authors: laczny cc. Brief Bioinform. 2021 Nov 5;22(6):bbab330. doi: 10.1093/bib/bbab330. Brief Bioinform. 2021. PMID: 34453168 Free PMC article.

9

Altered infective competence of the human gut microbiome in COVID-19.

de Nies L, Galata V, Martin-Gallausiaux C, Despotovic M, Busi SB, Snoeck CJ, Delacour L, Budagavi DP, Laczny CC, Habier J, Lupu PC, Halder R, Fritz JV, Marques T, Sandt E, O'Sullivan MP, Ghosh S, Satagopam V; CON-VINCE Consortium; Krüger R, Fagherazzi G, Ollert M, Hefeng FQ, May P, Wilmes P. de Nies L, et al. Among authors: laczny cc. Microbiome. 2023 Mar 9;11(1):46. doi: 10.1186/s40168-023-01472-7. Microbiome. 2023. PMID: 36894986 Free PMC article.

10

Alignment-free visualization of metagenomic data by nonlinear dimension reduction.

Laczny CC, Pinel N, Vlassis N, Wilmes P. Laczny CC, et al. Sci Rep. 2014 Mar 31;4:4516. doi: 10.1038/srep04516. Sci Rep. 2014. PMID: 24682077 Free PMC article.

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