Nikolaev S - Search Results

1

Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection.

Popadin K, Peischl S, Garieri M, Sailani MR, Letourneau A, Santoni F, Lukowski SW, Bazykin GA, Nikolaev S, Meyer D, Excoffier L, Reymond A, Antonarakis SE. Popadin K, et al. Among authors: nikolaev s. Genome Res. 2018 Jan;28(1):1-10. doi: 10.1101/gr.228411.117. Epub 2017 Dec 13. Genome Res. 2018. PMID: 29237728 Free PMC article.

2

APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication.

Seplyarskiy VB, Soldatov RA, Popadin KY, Antonarakis SE, Bazykin GA, Nikolaev SI. Seplyarskiy VB, et al. Genome Res. 2016 Feb;26(2):174-82. doi: 10.1101/gr.197046.115. Epub 2016 Jan 11. Genome Res. 2016. PMID: 26755635 Free PMC article.

3

Simultaneous identification and prioritization of variants in familial, de novo, and somatic genetic disorders with VariantMaster.

Santoni FA, Makrythanasis P, Nikolaev S, Guipponi M, Robyr D, Bottani A, Antonarakis SE. Santoni FA, et al. Among authors: nikolaev s. Genome Res. 2014 Feb;24(2):349-55. doi: 10.1101/gr.163832.113. Epub 2014 Jan 3. Genome Res. 2014. PMID: 24389049 Free PMC article.

4

Gene age predicts the strength of purifying selection acting on gene expression variation in humans.

Popadin KY, Gutierrez-Arcelus M, Lappalainen T, Buil A, Steinberg J, Nikolaev SI, Lukowski SW, Bazykin GA, Seplyarskiy VB, Ioannidis P, Zdobnov EM, Dermitzakis ET, Antonarakis SE. Popadin KY, et al. Am J Hum Genet. 2014 Dec 4;95(6):660-74. doi: 10.1016/j.ajhg.2014.11.003. Am J Hum Genet. 2014. PMID: 25480033 Free PMC article.

5

Human mismatch repair system balances mutation rates between strands by removing more mismatches from the lagging strand.

Andrianova MA, Bazykin GA, Nikolaev SI, Seplyarskiy VB. Andrianova MA, et al. Genome Res. 2017 Aug;27(8):1336-1343. doi: 10.1101/gr.219915.116. Epub 2017 May 16. Genome Res. 2017. PMID: 28512192 Free PMC article.

6

Transcriptional and post-transcriptional profile of human chromosome 21.

Nikolaev SI, Deutsch S, Genolet R, Borel C, Parand L, Ucla C, Schütz F, Duriaux Sail G, Dupré Y, Jaquier-Gubler P, Araud T, Conne B, Descombes P, Vassalli JD, Curran J, Antonarakis SE. Nikolaev SI, et al. Genome Res. 2009 Aug;19(8):1471-9. doi: 10.1101/gr.089425.108. Epub 2009 Jul 6. Genome Res. 2009. PMID: 19581486 Free PMC article.

7

Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes.

Popadin KY, Nikolaev SI, Junier T, Baranova M, Antonarakis SE. Popadin KY, et al. Mol Biol Evol. 2013 Feb;30(2):347-55. doi: 10.1093/molbev/mss219. Epub 2012 Sep 14. Mol Biol Evol. 2013. PMID: 22983951

8

Exome sequencing identifies putative drivers of progression of transient myeloproliferative disorder to AMKL in infants with Down syndrome.

Nikolaev SI, Santoni F, Vannier A, Falconnet E, Giarin E, Basso G, Hoischen A, Veltman JA, Groet J, Nizetic D, Antonarakis SE. Nikolaev SI, et al. Blood. 2013 Jul 25;122(4):554-61. doi: 10.1182/blood-2013-03-491936. Epub 2013 Jun 3. Blood. 2013. PMID: 23733339 Free article.

9

Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinoma.

Bonilla X, Parmentier L, King B, Bezrukov F, Kaya G, Zoete V, Seplyarskiy VB, Sharpe HJ, McKee T, Letourneau A, Ribaux PG, Popadin K, Basset-Seguin N, Ben Chaabene R, Santoni FA, Andrianova MA, Guipponi M, Garieri M, Verdan C, Grosdemange K, Sumara O, Eilers M, Aifantis I, Michielin O, de Sauvage FJ, Antonarakis SE, Nikolaev SI. Bonilla X, et al. Nat Genet. 2016 Apr;48(4):398-406. doi: 10.1038/ng.3525. Epub 2016 Mar 7. Nat Genet. 2016. PMID: 26950094

10

Detection of genomic variation by selection of a 9 mb DNA region and high throughput sequencing.

Nikolaev SI, Iseli C, Sharp AJ, Robyr D, Rougemont J, Gehrig C, Farinelli L, Antonarakis SE. Nikolaev SI, et al. PLoS One. 2009 Aug 17;4(8):e6659. doi: 10.1371/journal.pone.0006659. PLoS One. 2009. PMID: 19684856 Free PMC article.

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