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Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.
Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW. Glusman G, et al. Among authors: godzik a. Genome Med. 2017 Dec 18;9(1):113. doi: 10.1186/s13073-017-0509-y. Genome Med. 2017. PMID: 29254494 Free PMC article. Review.
Outcome of a workshop on archiving structural models of biological macromolecules.
Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD. Berman HM, et al. Among authors: godzik a. Structure. 2006 Aug;14(8):1211-7. doi: 10.1016/j.str.2006.06.005. Structure. 2006. PMID: 16955948 Free article. No abstract available.
Outcome of a workshop on applications of protein models in biomedical research.
Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL Jr, Fidelis K, Fiser A, Godzik A, Huang YJ, Humblet C, Jacobson MP, Joachimiak A, Krystek SR Jr, Kortemme T, Kryshtafovych A, Montelione GT, Moult J, Murray D, Sanchez R, Sosnick TR, Standley DM, Stouch T, Vajda S, Vasquez M, Westbrook JD, Wilson IA. Schwede T, et al. Among authors: godzik a. Structure. 2009 Feb 13;17(2):151-9. doi: 10.1016/j.str.2008.12.014. Structure. 2009. PMID: 19217386 Free PMC article.
Pre-calculated protein structure alignments at the RCSB PDB website.
Prlic A, Bliven S, Rose PW, Bluhm WF, Bizon C, Godzik A, Bourne PE. Prlic A, et al. Among authors: godzik a. Bioinformatics. 2010 Dec 1;26(23):2983-5. doi: 10.1093/bioinformatics/btq572. Epub 2010 Oct 10. Bioinformatics. 2010. PMID: 20937596 Free PMC article.
POSA: a user-driven, interactive multiple protein structure alignment server.
Li Z, Natarajan P, Ye Y, Hrabe T, Godzik A. Li Z, et al. Among authors: godzik a. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W240-5. doi: 10.1093/nar/gku394. Epub 2014 May 16. Nucleic Acids Res. 2014. PMID: 24838569 Free PMC article.
POSA (Partial Order Structure Alignment), available at http://posa.godziklab.org, is a server for multiple protein structure alignment introduced in 2005 (Ye,Y. and Godzik,A. (2005) Multiple flexible structure alignment using partial order graphs. ...This int …
POSA (Partial Order Structure Alignment), available at http://posa.godziklab.org, is a server for multiple protein structure alignmen …
Cancer3D: understanding cancer mutations through protein structures.
Porta-Pardo E, Hrabe T, Godzik A. Porta-Pardo E, et al. Among authors: godzik a. Nucleic Acids Res. 2015 Jan;43(Database issue):D968-73. doi: 10.1093/nar/gku1140. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392415 Free PMC article.
A Pan-Cancer Catalogue of Cancer Driver Protein Interaction Interfaces.
Porta-Pardo E, Garcia-Alonso L, Hrabe T, Dopazo J, Godzik A. Porta-Pardo E, et al. Among authors: godzik a. PLoS Comput Biol. 2015 Oct 20;11(10):e1004518. doi: 10.1371/journal.pcbi.1004518. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26485003 Free PMC article.
392 results