Mathews DH - Search Results

1

Widespread temperature sensitivity and tRNA decay due to mutations in a yeast tRNA.

Payea MJ, Sloma MF, Kon Y, Young DL, Guy MP, Zhang X, De Zoysa T, Fields S, Mathews DH, Phizicky EM. Payea MJ, et al. Among authors: mathews dh. RNA. 2018 Mar;24(3):410-422. doi: 10.1261/rna.064642.117. Epub 2017 Dec 19. RNA. 2018. PMID: 29259051 Free PMC article.

2

Predicting helical coaxial stacking in RNA multibranch loops.

Tyagi R, Mathews DH. Tyagi R, et al. Among authors: mathews dh. RNA. 2007 Jul;13(7):939-51. doi: 10.1261/rna.305307. Epub 2007 May 16. RNA. 2007. PMID: 17507661 Free PMC article.

3

Improved RNA secondary structure prediction by maximizing expected pair accuracy.

Lu ZJ, Gloor JW, Mathews DH. Lu ZJ, et al. Among authors: mathews dh. RNA. 2009 Oct;15(10):1805-13. doi: 10.1261/rna.1643609. Epub 2009 Aug 24. RNA. 2009. PMID: 19703939 Free PMC article.

4

ProbKnot: fast prediction of RNA secondary structure including pseudoknots.

Bellaousov S, Mathews DH. Bellaousov S, et al. Among authors: mathews dh. RNA. 2010 Oct;16(10):1870-80. doi: 10.1261/rna.2125310. Epub 2010 Aug 10. RNA. 2010. PMID: 20699301 Free PMC article.

5

Computational approaches for RNA energy parameter estimation.

Andronescu M, Condon A, Hoos HH, Mathews DH, Murphy KP. Andronescu M, et al. Among authors: mathews dh. RNA. 2010 Dec;16(12):2304-18. doi: 10.1261/rna.1950510. Epub 2010 Oct 12. RNA. 2010. PMID: 20940338 Free PMC article.

6

Air proteins control differential TRAMP substrate specificity for nuclear RNA surveillance.

Schmidt K, Xu Z, Mathews DH, Butler JS. Schmidt K, et al. Among authors: mathews dh. RNA. 2012 Oct;18(10):1934-45. doi: 10.1261/rna.033431.112. Epub 2012 Aug 24. RNA. 2012. PMID: 22923767 Free PMC article.

7

Identification of the determinants of tRNA function and susceptibility to rapid tRNA decay by high-throughput in vivo analysis.

Guy MP, Young DL, Payea MJ, Zhang X, Kon Y, Dean KM, Grayhack EJ, Mathews DH, Fields S, Phizicky EM. Guy MP, et al. Among authors: mathews dh. Genes Dev. 2014 Aug 1;28(15):1721-32. doi: 10.1101/gad.245936.114. Genes Dev. 2014. PMID: 25085423 Free PMC article.

8

Influence of Sequence and Covalent Modifications on Yeast tRNA Dynamics.

Zhang X, Walker RC, Phizicky EM, Mathews DH. Zhang X, et al. Among authors: mathews dh. J Chem Theory Comput. 2014 Aug 12;10(8):3473-3483. doi: 10.1021/ct500107y. Epub 2014 May 28. J Chem Theory Comput. 2014. PMID: 25136272 Free PMC article.

9

Improving RNA secondary structure prediction with structure mapping data.

Sloma MF, Mathews DH. Sloma MF, et al. Among authors: mathews dh. Methods Enzymol. 2015;553:91-114. doi: 10.1016/bs.mie.2014.10.053. Epub 2015 Feb 3. Methods Enzymol. 2015. PMID: 25726462

10

Molecular mechanism for preQ1-II riboswitch function revealed by molecular dynamics.

Aytenfisu AH, Liberman JA, Wedekind JE, Mathews DH. Aytenfisu AH, et al. Among authors: mathews dh. RNA. 2015 Nov;21(11):1898-907. doi: 10.1261/rna.051367.115. Epub 2015 Sep 14. RNA. 2015. PMID: 26370581 Free PMC article.

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