Mateo JL - Search Results

1

Refined sgRNA efficacy prediction improves large- and small-scale CRISPR-Cas9 applications.

Labuhn M, Adams FF, Ng M, Knoess S, Schambach A, Charpentier EM, Schwarzer A, Mateo JL, Klusmann JH, Heckl D. Labuhn M, et al. Among authors: mateo jl. Nucleic Acids Res. 2018 Feb 16;46(3):1375-1385. doi: 10.1093/nar/gkx1268. Nucleic Acids Res. 2018. PMID: 29267886 Free PMC article.

2

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Stemmer M, Thumberger T, Del Sol Keyer M, Wittbrodt J, Mateo JL. Stemmer M, et al. Among authors: mateo jl. PLoS One. 2015 Apr 24;10(4):e0124633. doi: 10.1371/journal.pone.0124633. eCollection 2015. PLoS One. 2015. PMID: 25909470 Free PMC article.

3

MEPD: medaka expression pattern database, genes and more.

Alonso-Barba JI, Rahman RU, Wittbrodt J, Mateo JL. Alonso-Barba JI, et al. Among authors: mateo jl. Nucleic Acids Res. 2016 Jan 4;44(D1):D819-21. doi: 10.1093/nar/gkv1029. Epub 2015 Oct 7. Nucleic Acids Res. 2016. PMID: 26450962 Free PMC article.

4

Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction.

Cornean A, Gierten J, Welz B, Mateo JL, Thumberger T, Wittbrodt J. Cornean A, et al. Among authors: mateo jl. Elife. 2022 Apr 4;11:e72124. doi: 10.7554/eLife.72124. Elife. 2022. PMID: 35373735 Free PMC article.

5

Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle.

Dolle D, Mateo JL, Eichenlaub MP, Sinn R, Reinhardt R, Höckendorf B, Inoue D, Centanin L, Ettwiller L, Wittbrodt J. Dolle D, et al. Among authors: mateo jl. PLoS One. 2015 Oct 27;10(10):e0141487. doi: 10.1371/journal.pone.0141487. eCollection 2015. PLoS One. 2015. PMID: 26505748 Free PMC article.

6

Correction: CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Stemmer M, Thumberger T, Del Sol Keyer M, Wittbrodt J, Mateo JL. Stemmer M, et al. Among authors: mateo jl. PLoS One. 2017 Apr 20;12(4):e0176619. doi: 10.1371/journal.pone.0176619. eCollection 2017. PLoS One. 2017. PMID: 28426791 Free PMC article.

7

iDamIDseq and iDEAR: an improved method and computational pipeline to profile chromatin-binding proteins.

Gutierrez-Triana JA, Mateo JL, Ibberson D, Ryu S, Wittbrodt J. Gutierrez-Triana JA, et al. Among authors: mateo jl. Development. 2016 Nov 15;143(22):4272-4278. doi: 10.1242/dev.139261. Epub 2016 Oct 5. Development. 2016. PMID: 27707796 Free PMC article.

8

yap1b, a divergent Yap/Taz family member, cooperates with yap1 in survival and morphogenesis via common transcriptional targets.

Vázquez-Marín J, Gutiérrez-Triana JA, Almuedo-Castillo M, Buono L, Gómez-Skarmeta JL, Mateo JL, Wittbrodt J, Martínez-Morales JR. Vázquez-Marín J, et al. Among authors: mateo jl. Development. 2019 Jun 21;146(13):dev173286. doi: 10.1242/dev.173286. Development. 2019. PMID: 31142542 Free article.

9

Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.

Mateo JL, van den Berg DL, Haeussler M, Drechsel D, Gaber ZB, Castro DS, Robson P, Lu QR, Crawford GE, Flicek P, Ettwiller L, Wittbrodt J, Guillemot F, Martynoga B. Mateo JL, et al. Genome Res. 2015 Jan;25(1):41-56. doi: 10.1101/gr.173435.114. Epub 2014 Oct 7. Genome Res. 2015. PMID: 25294244 Free PMC article.

10

TGFβ-facilitated optic fissure fusion and the role of bone morphogenetic protein antagonism.

Knickmeyer MD, Mateo JL, Eckert P, Roussa E, Rahhal B, Zuniga A, Krieglstein K, Wittbrodt J, Heermann S. Knickmeyer MD, et al. Among authors: mateo jl. Open Biol. 2018 Mar;8(3):170134. doi: 10.1098/rsob.170134. Open Biol. 2018. PMID: 29593116 Free PMC article.

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