Gu J - Search Results

1

CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.

Chen X, Gu J, Wang X, Jung JG, Wang TL, Hilakivi-Clarke L, Clarke R, Xuan J. Chen X, et al. Among authors: gu j. Bioinformatics. 2018 May 15;34(10):1733-1740. doi: 10.1093/bioinformatics/btx827. Bioinformatics. 2018. PMID: 29280996 Free PMC article.

2

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.

Gu J, Xuan J, Riggins RB, Chen L, Wang Y, Clarke R. Gu J, et al. Bioinformatics. 2012 Aug 1;28(15):1990-7. doi: 10.1093/bioinformatics/bts296. Epub 2012 May 17. Bioinformatics. 2012. PMID: 22595208 Free PMC article.

3

DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.

Wang X, Gu J, Hilakivi-Clarke L, Clarke R, Xuan J. Wang X, et al. Among authors: gu j. Bioinformatics. 2017 Jan 15;33(2):161-168. doi: 10.1093/bioinformatics/btw596. Epub 2016 Sep 11. Bioinformatics. 2017. PMID: 27616707 Free PMC article.

4

BICORN: An R package for integrative inference of de novo cis-regulatory modules.

Chen X, Gu J, Neuwald AF, Hilakivi-Clarke L, Clarke R, Xuan J. Chen X, et al. Among authors: gu j. Sci Rep. 2020 May 14;10(1):7960. doi: 10.1038/s41598-020-63043-2. Sci Rep. 2020. PMID: 32409786 Free PMC article.

5

Integrative network analysis to identify aberrant pathway networks in ovarian cancer.

Chen L, Xuan J, Gu J, Wang Y, Zhang Z, Wang TL, Shih IeM. Chen L, et al. Among authors: gu j. Pac Symp Biocomput. 2012:31-42. Pac Symp Biocomput. 2012. PMID: 22174260 Free PMC article.

6

GIST: a Gibbs sampler to identify intracellular signal transduction pathways.

Gu J, Wang C, Shih IeM, Wang TL, Wang Y, Clarke R, Xuan J. Gu J, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2011;2011:2434-7. doi: 10.1109/IEMBS.2011.6090677. Annu Int Conf IEEE Eng Med Biol Soc. 2011. PMID: 22254833 Free PMC article.

7

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.

Shi X, Gu J, Chen X, Shajahan A, Hilakivi-Clarke L, Clarke R, Xuan J. Shi X, et al. Among authors: gu j. BMC Syst Biol. 2013;7 Suppl 5(Suppl 5):S4. doi: 10.1186/1752-0509-7-S5-S4. Epub 2013 Dec 9. BMC Syst Biol. 2013. PMID: 24564939 Free PMC article.

8

BADGE: a novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.

Gu J, Wang X, Halakivi-Clarke L, Clarke R, Xuan J. Gu J, et al. BMC Bioinformatics. 2014;15 Suppl 9(Suppl 9):S6. doi: 10.1186/1471-2105-15-S9-S6. Epub 2014 Sep 10. BMC Bioinformatics. 2014. PMID: 25252852 Free PMC article.

9

Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence.

Chen X, Gu J, Neuwald AF, Hilakivi-Clarke L, Clarke R, Xuan J. Chen X, et al. Among authors: gu j. Sci Rep. 2021 Jan 11;11(1):385. doi: 10.1038/s41598-020-79603-5. Sci Rep. 2021. PMID: 33432018 Free PMC article.

10

Author Correction: BICORN: An R package for integrative inference of de novo cis-regulatory modules.

Chen X, Gu J, Neuwald AF, Hilakivi-Clarke L, Clarke R, Xuan J. Chen X, et al. Among authors: gu j. Sci Rep. 2020 Oct 7;10(1):16962. doi: 10.1038/s41598-020-74149-y. Sci Rep. 2020. PMID: 33028952 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

12,759 results

Search Page

Filters