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ProForma: A Standard Proteoform Notation.
LeDuc RD, Schwämmle V, Shortreed MR, Cesnik AJ, Solntsev SK, Shaw JB, Martin MJ, Vizcaino JA, Alpi E, Danis P, Kelleher NL, Smith LM, Ge Y, Agar JN, Chamot-Rooke J, Loo JA, Pasa-Tolic L, Tsybin YO. LeDuc RD, et al. Among authors: martin mj. J Proteome Res. 2018 Mar 2;17(3):1321-1325. doi: 10.1021/acs.jproteome.7b00851. Epub 2018 Feb 14. J Proteome Res. 2018. PMID: 29397739 Free PMC article.
Analysis of the tryptic search space in UniProt databases.
Alpi E, Griss J, da Silva AW, Bely B, Antunes R, Zellner H, Ríos D, O'Donovan C, Vizcaíno JA, Martin MJ. Alpi E, et al. Among authors: martin mj. Proteomics. 2015 Jan;15(1):48-57. doi: 10.1002/pmic.201400227. Epub 2014 Dec 3. Proteomics. 2015. PMID: 25307260 Free PMC article.
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
MacDougall A, Volynkin V, Saidi R, Poggioli D, Zellner H, Hatton-Ellis E, Joshi V, O'Donovan C, Orchard S, Auchincloss AH, Baratin D, Bolleman J, Coudert E, de Castro E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Arighi C, Wang Q, Chen C, Huang H, Garavelli J, Vinayaka CR, Yeh LS, Natale DA, Laiho K, Martin MJ, Renaux A, Pichler K; UniProt Consortium. MacDougall A, et al. Among authors: martin mj. Bioinformatics. 2020 Nov 1;36(17):4643-4648. doi: 10.1093/bioinformatics/btaa485. Bioinformatics. 2020. PMID: 32399560 Free PMC article.
REDIportal: toward an integrated view of the A-to-I editing.
D'Addabbo P, Cohen-Fultheim R, Twersky I, Fonzino A, Silvestris DA, Prakash A, Mazzacuva PL, Vizcaino JA, Green A, Sweeney B, Yates A, Lussi Y, Luo J, Martin MJ, Eisenberg E, Levanon EY, Pesole G, Picardi E. D'Addabbo P, et al. Among authors: martin mj. Nucleic Acids Res. 2024 Nov 26:gkae1083. doi: 10.1093/nar/gkae1083. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39588754
High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
O'Donovan C, Martin MJ, Gattiker A, Gasteiger E, Bairoch A, Apweiler R. O'Donovan C, et al. Among authors: martin mj. Brief Bioinform. 2002 Sep;3(3):275-84. doi: 10.1093/bib/3.3.275. Brief Bioinform. 2002. PMID: 12230036
Managing core resources for genomics and proteomics.
Apweiler R, Martin MJ, O'Donovan C, Pruess M. Apweiler R, et al. Among authors: martin mj. Pharmacogenomics. 2003 May;4(3):343-50. doi: 10.1517/phgs.4.3.343.22689. Pharmacogenomics. 2003. PMID: 12718724 Review.
1,016 results