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MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.
Gawronski AR, Uhl M, Zhang Y, Lin YY, Niknafs YS, Ramnarine VR, Malik R, Feng F, Chinnaiyan AM, Collins CC, Sahinalp SC, Backofen R. Gawronski AR, et al. Among authors: backofen r. Bioinformatics. 2018 Sep 15;34(18):3101-3110. doi: 10.1093/bioinformatics/bty208. Bioinformatics. 2018. PMID: 29617966 Free PMC article.
INFO-RNA--a fast approach to inverse RNA folding.
Busch A, Backofen R. Busch A, et al. Among authors: backofen r. Bioinformatics. 2006 Aug 1;22(15):1823-31. doi: 10.1093/bioinformatics/btl194. Epub 2006 May 18. Bioinformatics. 2006. PMID: 16709587
CPSP-web-tools: a server for 3D lattice protein studies.
Mann M, Smith C, Rabbath M, Edwards M, Will S, Backofen R. Mann M, et al. Among authors: backofen r. Bioinformatics. 2009 Mar 1;25(5):676-7. doi: 10.1093/bioinformatics/btp034. Epub 2009 Jan 16. Bioinformatics. 2009. PMID: 19151096 Free PMC article.
Fast prediction of RNA-RNA interaction.
Salari R, Backofen R, Sahinalp SC. Salari R, et al. Among authors: backofen r. Algorithms Mol Biol. 2010 Jan 4;5:5. doi: 10.1186/1748-7188-5-5. Algorithms Mol Biol. 2010. PMID: 20047661 Free PMC article.
267 results