Rodrigo AG - Search Results

1

Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation sequencing strategies.

Ranjard L, Wong TKF, Rodrigo AG. Ranjard L, et al. Among authors: rodrigo ag. PLoS One. 2018 Apr 5;13(4):e0195090. doi: 10.1371/journal.pone.0195090. eCollection 2018. PLoS One. 2018. PMID: 29621260 Free PMC article.

2

Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage.

Ranjard L, Wong TKF, Rodrigo AG. Ranjard L, et al. Among authors: rodrigo ag. BMC Bioinformatics. 2019 Dec 11;20(1):654. doi: 10.1186/s12859-019-3287-2. BMC Bioinformatics. 2019. PMID: 31829137 Free PMC article.

3

An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes.

Wong TKF, Li T, Ranjard L, Wu SH, Sukumaran J, Rodrigo AG. Wong TKF, et al. Among authors: rodrigo ag. PLoS Comput Biol. 2021 Sep 13;17(9):e1008949. doi: 10.1371/journal.pcbi.1008949. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34516547 Free PMC article.

4

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations.

Wong TKF, Ranjard L, Lin Y, Rodrigo AG. Wong TKF, et al. Among authors: rodrigo ag. BMC Bioinformatics. 2018 Oct 22;19(1):389. doi: 10.1186/s12859-018-2424-7. BMC Bioinformatics. 2018. PMID: 30348075 Free PMC article.

5

Correction to: Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage.

Ranjard L, Wong TKF, Rodrigo AG. Ranjard L, et al. Among authors: rodrigo ag. BMC Bioinformatics. 2020 Jan 22;21(1):24. doi: 10.1186/s12859-019-3318-z. BMC Bioinformatics. 2020. PMID: 31969110 Free PMC article.

6

Complete mitochondrial genome of the green-lipped mussel, Perna canaliculus (Mollusca: Mytiloidea), from long nanopore sequencing reads.

Ranjard L, Wong TKF, Külheim C, Rodrigo AG, Ragg NLC, Patel S, Dunphy BJ. Ranjard L, et al. Among authors: rodrigo ag. Mitochondrial DNA B Resour. 2018 Feb 9;3(1):175-176. doi: 10.1080/23802359.2018.1437810. Mitochondrial DNA B Resour. 2018. PMID: 33490494 Free PMC article.

7

pgHMA: Application of the heteroduplex mobility assay analysis in phylogenetics and population genetics.

Li T, Wong TKF, Ranjard L, Rodrigo AG. Li T, et al. Among authors: rodrigo ag. Mol Ecol Resour. 2022 Feb;22(2):653-663. doi: 10.1111/1755-0998.13508. Epub 2021 Oct 5. Mol Ecol Resour. 2022. PMID: 34551204

8

Genetic Variants of CLPP and M1AP Are Associated With Risk of Non-Small Cell Lung Cancer.

Li X, Zou Y, Li T, Wong TKF, Bushey RT, Campa MJ, Gottlin EB, Liu H, Wei Q, Rodrigo A, Patz EF Jr. Li X, et al. Front Oncol. 2021 Sep 15;11:709829. doi: 10.3389/fonc.2021.709829. eCollection 2021. Front Oncol. 2021. PMID: 34604049 Free PMC article.

9

Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals.

Wu SH, Rodrigo AG. Wu SH, et al. Among authors: rodrigo ag. BMC Bioinformatics. 2015 Nov 4;16:357. doi: 10.1186/s12859-015-0810-y. BMC Bioinformatics. 2015. PMID: 26536860 Free PMC article.

10

Neutral models of short-term microbiome dynamics with host subpopulation structure and migration limitation.

Zeng Q, Rodrigo A. Zeng Q, et al. Microbiome. 2018 Apr 27;6(1):80. doi: 10.1186/s40168-018-0464-x. Microbiome. 2018. PMID: 29703247 Free PMC article.

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