Jia Z - Search Results

1

Gaussian-Based Smooth Dielectric Function: A Surface-Free Approach for Modeling Macromolecular Binding in Solvents.

Chakravorty A, Jia Z, Peng Y, Tajielyato N, Wang L, Alexov E. Chakravorty A, et al. Among authors: jia z. Front Mol Biosci. 2018 Mar 27;5:25. doi: 10.3389/fmolb.2018.00025. eCollection 2018. Front Mol Biosci. 2018. PMID: 29637074 Free PMC article.

2

Treating ion distribution with Gaussian-based smooth dielectric function in DelPhi.

Jia Z, Li L, Chakravorty A, Alexov E. Jia Z, et al. J Comput Chem. 2017 Aug 15;38(22):1974-1979. doi: 10.1002/jcc.24831. Epub 2017 Jun 11. J Comput Chem. 2017. PMID: 28602026 Free PMC article.

3

Reproducing the Ensemble Average Polar Solvation Energy of a Protein from a Single Structure: Gaussian-Based Smooth Dielectric Function for Macromolecular Modeling.

Chakravorty A, Jia Z, Li L, Zhao S, Alexov E. Chakravorty A, et al. Among authors: jia z. J Chem Theory Comput. 2018 Feb 13;14(2):1020-1032. doi: 10.1021/acs.jctc.7b00756. Epub 2018 Feb 3. J Chem Theory Comput. 2018. PMID: 29350933 Free PMC article.

4

DFMD: Fast and Effective DelPhiForce Steered Molecular Dynamics Approach to Model Ligand Approach Toward a Receptor: Application to Spermine Synthase Enzyme.

Peng Y, Yang Y, Li L, Jia Z, Cao W, Alexov E. Peng Y, et al. Among authors: jia z. Front Mol Biosci. 2019 Sep 4;6:74. doi: 10.3389/fmolb.2019.00074. eCollection 2019. Front Mol Biosci. 2019. PMID: 31552265 Free PMC article.

5

A New DelPhi Feature for Modeling Electrostatic Potential around Proteins: Role of Bound Ions and Implications for Zeta-Potential.

Chakravorty A, Jia Z, Li L, Alexov E. Chakravorty A, et al. Among authors: jia z. Langmuir. 2017 Mar 7;33(9):2283-2295. doi: 10.1021/acs.langmuir.6b04430. Epub 2017 Feb 20. Langmuir. 2017. PMID: 28181811 Free PMC article.

6

DelPhiForce web server: electrostatic forces and energy calculations and visualization.

Li L, Jia Z, Peng Y, Chakravorty A, Sun L, Alexov E. Li L, et al. Among authors: jia z. Bioinformatics. 2017 Nov 15;33(22):3661-3663. doi: 10.1093/bioinformatics/btx495. Bioinformatics. 2017. PMID: 29036596 Free PMC article.

7

Predicting protein-DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver.

Peng Y, Sun L, Jia Z, Li L, Alexov E. Peng Y, et al. Among authors: jia z. Bioinformatics. 2018 Mar 1;34(5):779-786. doi: 10.1093/bioinformatics/btx698. Bioinformatics. 2018. PMID: 29091991 Free PMC article.

8

DelPhi Suite: New Developments and Review of Functionalities.

Li C, Jia Z, Chakravorty A, Pahari S, Peng Y, Basu S, Koirala M, Panday SK, Petukh M, Li L, Alexov E. Li C, et al. Among authors: jia z. J Comput Chem. 2019 Oct 30;40(28):2502-2508. doi: 10.1002/jcc.26006. Epub 2019 Jun 25. J Comput Chem. 2019. PMID: 31237360 Free PMC article.

9

Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations.

Li L, Jia Z, Peng Y, Godar S, Getov I, Teng S, Alper J, Alexov E. Li L, et al. Among authors: jia z. Sci Rep. 2017 Aug 15;7(1):8237. doi: 10.1038/s41598-017-08419-7. Sci Rep. 2017. PMID: 28811629 Free PMC article.

10

Combination therapy of low-dose radiotherapy and immunotherapy in advanced metastatic nasopharyngeal carcinoma: a case report and literature review.

Chen CQ, Huang H, Pan M, Jia Z, Zhang J, Chen QQ. Chen CQ, et al. Among authors: jia z. Discov Oncol. 2025 Jan 15;16(1):52. doi: 10.1007/s12672-025-01794-y. Discov Oncol. 2025. PMID: 39812951

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